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Report for Sequence Feature Glyma.18g220100

Feature Type:gene_model
Chromosome:Gm18
Start:50708694
stop:50712773
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g220100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G54220.1AT GRAS family transcription factor JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0008356GO-bp asymmetric cell division EnsemblGenomesN/AIEA
GO:0009630GO-bp gravitropism EnsemblGenomesN/AIEA
GO:0009956GO-bp radial pattern formation EnsemblGenomesN/AIEA
GO:0048366GO-bp leaf development EnsemblGenomesN/AIEA
GO:0051457GO-bp maintenance of protein location in nucleus EnsemblGenomesN/AIEA
GO:0090610GO-bp bundle sheath cell fate specification EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0003700GO-mf DNA binding transcription factor activity EnsemblGenomesN/AIEA
GO:0043565GO-mf sequence-specific DNA binding EnsemblGenomesN/AIEA
PF03514PFAM GRAS domain family JGI N/AIEA

Expression Patterns of Glyma.18g220100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g220100
ParalogEvidenceComments
Glyma.09g270000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g220100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g45220 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g220100
>Glyma.18g220100.2 sequence-type=transcript locus=Glyma.18g220100 ID=Glyma.18g220100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CGAGGCACTAACCGCCGTGGCTAGTGCCATACATCCCTCCCCAACACAACACCCTCATTTTGCAACCATCCAAAAGGCAAAAGGCATAGAGAATCGTGTTGGAGAGAGGTGTGTCAATATTGGGAATCCTATAAACCACTGTCCCAATCTTCACAACGTTATCTGCTTGTAACTTTGGCCATGCCCCCCCTCTCCCTACCTACAAATTTCATTTCAAACTAACACCACACATTAACTTGTTTTTAAACCATACCCCCTCTTTACCTTAATTATTAGTATTTCACAAAGCAAAAACACACCGCTAGAATCTCTCAACAAAAAAAAATAAAAAAATTTCCATGATCTGAAGTACCTACCGACCCACCCATCATCACTTTTTTCATTAATtcttcttctatatctctctctctctctctctctctcactcactcactttctcATCCCCCATATATGGCTGCTTGTGCTTTGTTCAGTGCTGGCGGTAACATTACCGAAGATGGCAATGTTAATGGAAGTGGAAGTGCTTCTAGTACTCCTTTGACAAGTGCCTCTAACTCTAGCAGCATGAGCAACGAAGAAAAAAAACACAACCTACATGGTGGTGGCATCATGCCACAGCCTCATTGTGAAAGAAAAATGGTGAGAAAAAGAATGGCTTCTGAGATGGAAGTTAACGTTCACGCAACTCCACCACACAACTCTTCCTCCACAACAAGTGATTATCCTAGGTTTCCTCGTCGAAGCAGCACCAACATGAACATGTTAGAAAAAGGGTCCACCAGTaccaccacagcaacaacaacaacaTTAGCCGAAGAGATAACGTTGCTATTCCAAATTACCCCACTGTGACGGTCACAACCAACTACTCCACTATGTTGCTACCTTCATCCACCACCACCACTATCAATTCCTCTGGTGTTGCTCCAAACTACATCACTCACCACCAACACCATCATTTCCAAGGACTCGTTGAAAGCCAGGACCATCAGCAAAACCCTGTGCCTGCAGTTTGTGGATTCTCAGGGTTACCACTTTTTCCATCTCAAAGCCAAAGAAACCGAGACAGCAACAACACCCCCACCACCAACAACATAAGAAACAGTGGTGGAAATATTGTTGACGTGGTTGcttcttcttcttcttcttcttcCATGGATGACACTTCAGCAGCAGCAGCAACAAGTGGTTGGATCGATGGTATATTGAAGGATCTCATTCACAGTTCCAACAGTGTTTCGATTCCTCAACTAATCAGCAACGTGAGGGAGATCATATACCCTTGCAACCCCAACCTTGCAATGGTTCTTGAATACAGGTTGCGTCTTCTTCTCACTGAGTCTACAACACAAAACAAAAGAGGCACAGAAGGGGTGCCTCTTCCTCCTTCTGTTTCCTCAGTGAAGCTCACGAGCAACCGTGTTGTCGATGGCATTGTTCCTAATTTGCACTTCACAGATGCTTCAGGTGGTGCTGTGGTTGTGAATCAGCACATGTTGTCCAATTGGGGTGTGCCTCAAATCACTCATCACCATGATAAcaacaccaacaccaacaccaacaatagcaacaacCCTTCAGTTTCTTTGGTTACTTTGCCTTCACCAACACCGCCGCTACCACCACCTCATTATTCACCACCACAAGAGAAGCACCCTCAAGAAGAGGATCTAGCAGCAACCAGCACGGCTGAGGTGGCACTTTCaagaaagaagaaagaggagctgcgtgaacagaagaagaaagacgaaGAGGGTTTGCATCTTCTCACTTTGCTGCTTCAGTGTGCAGAAGCGGTTTCATCTGAGAATCTAGAAGATGCCAACAAGATGCTGCTGGAGATTTCTCAGTTGTCAACACCCTTCGGCACTTCAGCACAGCGTGTGGCAGCATATTTCTCAGAAGCCATATCAGCAAGGTTGGTGAGTTCATGCTTAGGGATATATGCCACTTTGCCACACACTCACCAAAGCCACAAGGTGGCTTCGGCTTTTCAAGTGTTCAATGGTATTAGTCCTTTCGTGAAGTTCTCACACTTCACAGCAAACCAAGCTATTCAAGAAGCTTTCGAGAGGGAAGAGAGGGTGCACATCATAGATCTTGACATAATGCAAGGGTTGCAGTGGCCTGGTTTGTTTCACATTCTAGCTTCAAGACCTGGTGGAGCACCTTATGTGAGGCTCACAGGGCTTGGTACCTCTATGGAAGCACTTGAAGCCACGGGAAAACGCTTGTCTGATTTTGCAAACAAACTTGGCCTTCCCTTTGAGTTCTTCCCTGTGGCTGAGAAAGTTGGGAACCTTGACCCTGAGAGGCTCAATGTTTGCAAAACCGAAGCTGTTGCTGTTCACTGGTTGCAACATTCCCTCTATGATGTCACTGGCTCAGACACCAACACCTTGTGGCTCTTGCAGAGGCTGGCACCTAAAGTGGTGACTGTGGTGGAGCAGGACCTAAGCAACACTGGTTCATTCTTGGGGAGGTTTGTGGAAGCCATACACTACTACTCAGCATTATTTGACTCTCTTGGGTCAAGCTATGGGGAGGAGAGTGAGGAGAGGCATGTGGTGGAACAGCAACTATTGTCTAGGGAGATTCGAAATGTGCTAGCTGTTGGGGGGCCATCAAGGACTGGAGAGCCAAAGTTTCATAACTGGAGGGAAAAGCTTCAACAGTGTGGGTTTAGAGGCATATCTCTAGCTGGTAATGCTGCCACACAAGCTAGTCTACTCCTTGGTATGTTCCCATCTGAGGGCTATACCTTGGTGGAGGACAATGGCATTCTTAAACTTGGTTGGAAGGACCTTTGCTTGCTCACTGCTTCAGCTTGGAGACCACCCTTCCATAGTGCCATTACCCATCACAACTAGGCTTTTGTGTTGGCCTTTTTCATCATCATCTCATTATTCTAATCATGTGTAGCATCCACCCCCTCTTTGTTACTTAATTTAGAGAGAGATTGTTAAGGTGATCCCATAGCACGTGATTTTTCTTGCCTAATGTGTACCACTTCAGCAGTAACATATTAAAAAGAAGATATAGTTAAAAATAGGAAACAGTGATATGACCAAATGGTTGAAGGGGTACCCCACTTATTGACATAATGCAAGAAAGTTCTCTTGCTCGGGGAGCACTTGGGAGTTTTTCTAATAGTATTTTATTAAGAGAACTTATAAGGATGTTACTTTTATATTCTGATTTTTAATGGTTACCCTTAAAAAGGATGTTACTTTATA
Coding sequences of Glyma.18g220100
>Glyma.18g220100.1 sequence-type=CDS polypeptide=Glyma.18g220100.1.p locus=Glyma.18g220100 ID=Glyma.18g220100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCTTGTGCTTTGTTCAGTGCTGGCGGTAACATTACCGAAGATGGCAATGTTAATGGAAGTGGAAGTGCTTCTAGTACTCCTTTGACAAGTGCCTCTAACTCTAGCAGCATGAGCAACGAAGAAAAAAAACACAACCTACATGGTGGTGGCATCATGCCACAGCCTCATTGTGAAAGAAAAATGGTGAGAAAAAGAATGGCTTCTGAGATGGAAGTTAACGTTCACGCAACTCCACCACACAACTCTTCCTCCACAACAAGTGATTATCCTAGGTTTCCTCGTCGAAGCAGCACCAACATGAACATGTTAGAAAAAGGGTCCACCAGTACCACCACAGCAACAACAACAACATTAGCCGAAGGTACATGTAATAATAATAATAATAATAATAATAATAATAATAATAGTAATTGTAGTAGCTATCATTATAATAATAGTAACAATAGTAATAGTGGTAATATTTCATCAAGAGATAACGTTGCTATTCCAAATTACCCCACTGTGACGGTCACAACCAACTACTCCACTATGTTGCTACCTTCATCCACCACCACCACTATCAATTCCTCTGGTGTTGCTCCAAACTACATCACTCACCACCAACACCATCATTTCCAAGGACTCGTTGAAAGCCAGGACCATCAGCAAAACCCTGTGCCTGCAGTTTGTGGATTCTCAGGGTTACCACTTTTTCCATCTCAAAGCCAAAGAAACCGAGACAGCAACAACACCCCCACCACCAACAACATAAGAAACAGTGGTGGAAATATTGTTGACGTGGTTGCTTCTTCTTCTTCTTCTTCTTCCATGGATGACACTTCAGCAGCAGCAGCAACAAGTGGTTGGATCGATGGTATATTGAAGGATCTCATTCACAGTTCCAACAGTGTTTCGATTCCTCAACTAATCAGCAACGTGAGGGAGATCATATACCCTTGCAACCCCAACCTTGCAATGGTTCTTGAATACAGGTTGCGTCTTCTTCTCACTGAGTCTACAACACAAAACAAAAGAGGCACAGAAGGGGTGCCTCTTCCTCCTTCTGTTTCCTCAGTGAAGCTCACGAGCAACCGTGTTGTCGATGGCATTGTTCCTAATTTGCACTTCACAGATGCTTCAGGTGGTGCTGTGGTTGTGAATCAGCACATGTTGTCCAATTGGGGTGTGCCTCAAATCACTCATCACCATGATAACAACACCAACACCAACACCAACAATAGCAACAACCCTTCAGTTTCTTTGGTTACTTTGCCTTCACCAACACCGCCGCTACCACCACCTCATTATTCACCACCACAAGAGAAGCACCCTCAAGAAGAGGATCTAGCAGCAACCAGCACGGCTGAGGTGGCACTTTCAAGAAAGAAGAAAGAGGAGCTGCGTGAACAGAAGAAGAAAGACGAAGAGGGTTTGCATCTTCTCACTTTGCTGCTTCAGTGTGCAGAAGCGGTTTCATCTGAGAATCTAGAAGATGCCAACAAGATGCTGCTGGAGATTTCTCAGTTGTCAACACCCTTCGGCACTTCAGCACAGCGTGTGGCAGCATATTTCTCAGAAGCCATATCAGCAAGGTTGGTGAGTTCATGCTTAGGGATATATGCCACTTTGCCACACACTCACCAAAGCCACAAGGTGGCTTCGGCTTTTCAAGTGTTCAATGGTATTAGTCCTTTCGTGAAGTTCTCACACTTCACAGCAAACCAAGCTATTCAAGAAGCTTTCGAGAGGGAAGAGAGGGTGCACATCATAGATCTTGACATAATGCAAGGGTTGCAGTGGCCTGGTTTGTTTCACATTCTAGCTTCAAGACCTGGTGGAGCACCTTATGTGAGGCTCACAGGGCTTGGTACCTCTATGGAAGCACTTGAAGCCACGGGAAAACGCTTGTCTGATTTTGCAAACAAACTTGGCCTTCCCTTTGAGTTCTTCCCTGTGGCTGAGAAAGTTGGGAACCTTGACCCTGAGAGGCTCAATGTTTGCAAAACCGAAGCTGTTGCTGTTCACTGGTTGCAACATTCCCTCTATGATGTCACTGGCTCAGACACCAACACCTTGTGGCTCTTGCAGAGGCTGGCACCTAAAGTGGTGACTGTGGTGGAGCAGGACCTAAGCAACACTGGTTCATTCTTGGGGAGGTTTGTGGAAGCCATACACTACTACTCAGCATTATTTGACTCTCTTGGGTCAAGCTATGGGGAGGAGAGTGAGGAGAGGCATGTGGTGGAACAGCAACTATTGTCTAGGGAGATTCGAAATGTGCTAGCTGTTGGGGGGCCATCAAGGACTGGAGAGCCAAAGTTTCATAACTGGAGGGAAAAGCTTCAACAGTGTGGGTTTAGAGGCATATCTCTAGCTGGTAATGCTGCCACACAAGCTAGTCTACTCCTTGGTATGTTCCCATCTGAGGGCTATACCTTGGTGGAGGACAATGGCATTCTTAAACTTGGTTGGAAGGACCTTTGCTTGCTCACTGCTTCAGCTTGGAGACCACCCTTCCATAGTGCCATTACCCATCACAACTAG

>Glyma.18g220100.2 sequence-type=CDS polypeptide=Glyma.18g220100.2.p locus=Glyma.18g220100 ID=Glyma.18g220100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGCTACCTTCATCCACCACCACCACTATCAATTCCTCTGGTGTTGCTCCAAACTACATCACTCACCACCAACACCATCATTTCCAAGGACTCGTTGAAAGCCAGGACCATCAGCAAAACCCTGTGCCTGCAGTTTGTGGATTCTCAGGGTTACCACTTTTTCCATCTCAAAGCCAAAGAAACCGAGACAGCAACAACACCCCCACCACCAACAACATAAGAAACAGTGGTGGAAATATTGTTGACGTGGTTGCTTCTTCTTCTTCTTCTTCTTCCATGGATGACACTTCAGCAGCAGCAGCAACAAGTGGTTGGATCGATGGTATATTGAAGGATCTCATTCACAGTTCCAACAGTGTTTCGATTCCTCAACTAATCAGCAACGTGAGGGAGATCATATACCCTTGCAACCCCAACCTTGCAATGGTTCTTGAATACAGGTTGCGTCTTCTTCTCACTGAGTCTACAACACAAAACAAAAGAGGCACAGAAGGGGTGCCTCTTCCTCCTTCTGTTTCCTCAGTGAAGCTCACGAGCAACCGTGTTGTCGATGGCATTGTTCCTAATTTGCACTTCACAGATGCTTCAGGTGGTGCTGTGGTTGTGAATCAGCACATGTTGTCCAATTGGGGTGTGCCTCAAATCACTCATCACCATGATAACAACACCAACACCAACACCAACAATAGCAACAACCCTTCAGTTTCTTTGGTTACTTTGCCTTCACCAACACCGCCGCTACCACCACCTCATTATTCACCACCACAAGAGAAGCACCCTCAAGAAGAGGATCTAGCAGCAACCAGCACGGCTGAGGTGGCACTTTCAAGAAAGAAGAAAGAGGAGCTGCGTGAACAGAAGAAGAAAGACGAAGAGGGTTTGCATCTTCTCACTTTGCTGCTTCAGTGTGCAGAAGCGGTTTCATCTGAGAATCTAGAAGATGCCAACAAGATGCTGCTGGAGATTTCTCAGTTGTCAACACCCTTCGGCACTTCAGCACAGCGTGTGGCAGCATATTTCTCAGAAGCCATATCAGCAAGGTTGGTGAGTTCATGCTTAGGGATATATGCCACTTTGCCACACACTCACCAAAGCCACAAGGTGGCTTCGGCTTTTCAAGTGTTCAATGGTATTAGTCCTTTCGTGAAGTTCTCACACTTCACAGCAAACCAAGCTATTCAAGAAGCTTTCGAGAGGGAAGAGAGGGTGCACATCATAGATCTTGACATAATGCAAGGGTTGCAGTGGCCTGGTTTGTTTCACATTCTAGCTTCAAGACCTGGTGGAGCACCTTATGTGAGGCTCACAGGGCTTGGTACCTCTATGGAAGCACTTGAAGCCACGGGAAAACGCTTGTCTGATTTTGCAAACAAACTTGGCCTTCCCTTTGAGTTCTTCCCTGTGGCTGAGAAAGTTGGGAACCTTGACCCTGAGAGGCTCAATGTTTGCAAAACCGAAGCTGTTGCTGTTCACTGGTTGCAACATTCCCTCTATGATGTCACTGGCTCAGACACCAACACCTTGTGGCTCTTGCAGAGGCTGGCACCTAAAGTGGTGACTGTGGTGGAGCAGGACCTAAGCAACACTGGTTCATTCTTGGGGAGGTTTGTGGAAGCCATACACTACTACTCAGCATTATTTGACTCTCTTGGGTCAAGCTATGGGGAGGAGAGTGAGGAGAGGCATGTGGTGGAACAGCAACTATTGTCTAGGGAGATTCGAAATGTGCTAGCTGTTGGGGGGCCATCAAGGACTGGAGAGCCAAAGTTTCATAACTGGAGGGAAAAGCTTCAACAGTGTGGGTTTAGAGGCATATCTCTAGCTGGTAATGCTGCCACACAAGCTAGTCTACTCCTTGGTATGTTCCCATCTGAGGGCTATACCTTGGTGGAGGACAATGGCATTCTTAAACTTGGTTGGAAGGACCTTTGCTTGCTCACTGCTTCAGCTTGGAGACCACCCTTCCATAGTGCCATTACCCATCACAACTAG
Predicted protein sequences of Glyma.18g220100
>Glyma.18g220100.1.p sequence-type=predicted peptide transcript=Glyma.18g220100.1 locus=Glyma.18g220100 ID=Glyma.18g220100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAACALFSAGGNITEDGNVNGSGSASSTPLTSASNSSSMSNEEKKHNLHGGGIMPQPHCERKMVRKRMASEMEVNVHATPPHNSSSTTSDYPRFPRRSSTNMNMLEKGSTSTTTATTTTLAEGTCNNNNNNNNNNNNSNCSSYHYNNSNNSNSGNISSRDNVAIPNYPTVTVTTNYSTMLLPSSTTTTINSSGVAPNYITHHQHHHFQGLVESQDHQQNPVPAVCGFSGLPLFPSQSQRNRDSNNTPTTNNIRNSGGNIVDVVASSSSSSSMDDTSAAAATSGWIDGILKDLIHSSNSVSIPQLISNVREIIYPCNPNLAMVLEYRLRLLLTESTTQNKRGTEGVPLPPSVSSVKLTSNRVVDGIVPNLHFTDASGGAVVVNQHMLSNWGVPQITHHHDNNTNTNTNNSNNPSVSLVTLPSPTPPLPPPHYSPPQEKHPQEEDLAATSTAEVALSRKKKEELREQKKKDEEGLHLLTLLLQCAEAVSSENLEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPHTHQSHKVASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGAPYVRLTGLGTSMEALEATGKRLSDFANKLGLPFEFFPVAEKVGNLDPERLNVCKTEAVAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLSNTGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRTGEPKFHNWREKLQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPFHSAITHHN*

>Glyma.18g220100.2.p sequence-type=predicted peptide transcript=Glyma.18g220100.2 locus=Glyma.18g220100 ID=Glyma.18g220100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLLPSSTTTTINSSGVAPNYITHHQHHHFQGLVESQDHQQNPVPAVCGFSGLPLFPSQSQRNRDSNNTPTTNNIRNSGGNIVDVVASSSSSSSMDDTSAAAATSGWIDGILKDLIHSSNSVSIPQLISNVREIIYPCNPNLAMVLEYRLRLLLTESTTQNKRGTEGVPLPPSVSSVKLTSNRVVDGIVPNLHFTDASGGAVVVNQHMLSNWGVPQITHHHDNNTNTNTNNSNNPSVSLVTLPSPTPPLPPPHYSPPQEKHPQEEDLAATSTAEVALSRKKKEELREQKKKDEEGLHLLTLLLQCAEAVSSENLEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPHTHQSHKVASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGAPYVRLTGLGTSMEALEATGKRLSDFANKLGLPFEFFPVAEKVGNLDPERLNVCKTEAVAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLSNTGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRTGEPKFHNWREKLQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPFHSAITHHN*






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