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Report for Sequence Feature Glyma.18g219100

Feature Type:gene_model
Chromosome:Gm18
Start:50589622
stop:50595557
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g219100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G08590.1AT Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent JGI N/AIEA
GO:0006007GO-bp glucose catabolic process EnsemblGenomesN/AIEA
GO:0006007GO-bp glucose catabolic process JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity JGI N/AIEA
GO:0004619GO-mf phosphoglycerate mutase activity EnsemblGenomesN/AIEA
GO:0004619GO-mf phosphoglycerate mutase activity JGI N/AIEA
GO:0030145GO-mf manganese ion binding EnsemblGenomesN/AIEA
GO:0030145GO-mf manganese ion binding JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding JGI N/AIEA
KOG4513 KOG Phosphoglycerate mutase JGI N/AIEA
PF01676PFAM Metalloenzyme superfamily JGI N/AIEA
PF06415PFAM BPG-independent PGAM N-terminus (iPGM_N) JGI N/AIEA
GLUCONEO-PWYSoyCyc9 gluconeogenesis I Plant Metabolic Network ISS
GLYCOLYSISSoyCyc9 glycolysis I (from glucose 6-phosphate) Plant Metabolic Network ISS
PWY-1042SoyCyc9 glycolysis IV (plant cytosol) Plant Metabolic Network ISS
PWY-5464SoyCyc9 superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle Plant Metabolic Network ISS
PWY-5484SoyCyc9 glycolysis II (from fructose 6-phosphate) Plant Metabolic Network ISS
PWY-5723SoyCyc9 Rubisco shunt Plant Metabolic Network ISS
PWY-7345SoyCyc9 superpathway of anaerobic sucrose degradation Plant Metabolic Network ISS
GN7V-62483SoyCyc9-rxn Enzyme name not determined Plant Metabolic Network ISS

Expression Patterns of Glyma.18g219100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18g219100 not represented in the dataset
Glyma.18g219100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g219100
ParalogEvidenceComments
Glyma.09g270500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g219100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g45121 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g219100
>Glyma.18g219100.1 sequence-type=CDS polypeptide=Glyma.18g219100.1.p locus=Glyma.18g219100 ID=Glyma.18g219100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTAGCTCAGGTTTCTCATGGAAATTGGCGGATCATCCAAAGCTTCCAAAGGGTAAGACTGTGGCTGTTGTGGTATTGGATGGTTGGGGAGAGGCCACACCCAATGAGTACAACTGCATCCACAAGGCTGAAACACCCTGCATGGATTCACTTAAAAAGGGTGCTCCTGAACGGTGGAGATTGGTCAGGGCTCATGGTACTGCTGTAGGACTTCCAACAGAAGATGACATGGGCAATAGTGAAGTTGGTCACAATGCCCTTGGGGCTGGTCGCATATTTGCTCAGGGTGCTAAGCTTGTCGACCTTGCTCTAGCCTCTGGAAAAATTTTTGAAGGAGAAGGTTTCAAGTACATAAAGGAATGTTTTGAAAATGGCACATTGCATCTCATTGGGCTACTGAGTGATGGTGGAGTTCACTCCAGACTTGATCAGTTGCAGTTGTTGCTTAAAGGAGTTAGTGAGCGAGGTGTTAAAAGAGTCCGTGTCCATATTCTTACAGATGGCCGTGATGTTTTGGATGGCTCAAGTGTGGGGTTTGTGGAAACCCTTGAAAATGATCTTGCAAACTTGCGCGCAAAAGGTGTCGATGCTAGGATAGCATCAGGTGGAGGTCGTATGAATGTCACAATGGATCGTTATGAGAATGATTGGAGTGTTGTGAAACGAGGGTGGGATGCTCAAGTTCTTGGTGAAGCCCCTTATAAGTTTACAAATGCTCTTGAAGCTGTCAAGAAGCTGAGGGCAGAACCAAAGGCCAATGACCAATATTTGCCTCCTTTTGTTATTGTTGACGAGAGTGGGAAACCTGTTGGTCCGATAGTTGATGGTGATGCTGTTGTTACATTCAACTTCCGAGCTGATCGTATGACAATGATTGCTAAAGCTCTTGAGTATGAAAATTTTGACAAATTTGATAGAGTTCGTTACCCAAAAATCCGCTATGCTGGAATGCTTGAATATGATGGTGAATTGAAACTTCCAAGTCATTACCTTGTTTCTCCACCAGAGATTGACAGGACTTCTGGTGAATATTTAGTGTATAATGGTATTCGGACTTTTGCTTGCAGTGAGACTGTTAAATTTGGCCACGTCACATTCTTCTGGAATGGAAACCGCTCTGGGTATTTTAATGCAGAATTGGAGGAATATGTGGAAATTCCTAGTGATTCTGGGATTACATTCAATGAACAACCATTAATGAAAGCATTGCAGATTGCTGAAAAGGCTAGGGATGCTATTCTTAGCGGGAAATTTGATCAGGTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAGGTGACATTGAAGCAACAGTTGTGGCATGCAAGGCAGCTGATGCTGCTGTGAAGATGATTCTTGATGCAATAGAGCAAGTGGGTGGAATTTATGTTGTCACAGCTGACCACGGGAATGCTGAGGATATGGTCAAGAGGGATAAATCTGGAAAACCACTTCTAGGCAAGGATGGAAAAATCCAGATTCTTACTTCCCATACTCTTGAGCCTGTGCCAATTGCTATTGGAGGTCCTGGATTGGCCCCTGGTGTCAGATTCCGCAACAATGTTCCAACTGGTGGACTTGCCAACGTTGCTGCAACTGTGATGAATCTTCATGGATTTGAGGCTCCCAGCGACTACGAGACAACTCTGATAGAAGTAGTTGATAACTAG
Predicted protein sequences of Glyma.18g219100
>Glyma.18g219100.1.p sequence-type=predicted peptide transcript=Glyma.18g219100.1 locus=Glyma.18g219100 ID=Glyma.18g219100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGSSGFSWKLADHPKLPKGKTVAVVVLDGWGEATPNEYNCIHKAETPCMDSLKKGAPERWRLVRAHGTAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIFEGEGFKYIKECFENGTLHLIGLLSDGGVHSRLDQLQLLLKGVSERGVKRVRVHILTDGRDVLDGSSVGFVETLENDLANLRAKGVDARIASGGGRMNVTMDRYENDWSVVKRGWDAQVLGEAPYKFTNALEAVKKLRAEPKANDQYLPPFVIVDESGKPVGPIVDGDAVVTFNFRADRMTMIAKALEYENFDKFDRVRYPKIRYAGMLEYDGELKLPSHYLVSPPEIDRTSGEYLVYNGIRTFACSETVKFGHVTFFWNGNRSGYFNAELEEYVEIPSDSGITFNEQPLMKALQIAEKARDAILSGKFDQVRVNLPNGDMVGHTGDIEATVVACKAADAAVKMILDAIEQVGGIYVVTADHGNAEDMVKRDKSGKPLLGKDGKIQILTSHTLEPVPIAIGGPGLAPGVRFRNNVPTGGLANVAATVMNLHGFEAPSDYETTLIEVVDN*






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