Glyma.18g216900

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Report for Sequence Feature Glyma.18g216900

Feature Type:	gene_model
Chromosome:	Gm18
Start:	50401763
stop:	50406217
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.18g216900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G32070.3	AT	nuclear shuttle interacting	JGI	N/A	IEA
GO:0008080	GO-mf	N-acetyltransferase activity	EnsemblGenomes	N/A	IEA
GO:0008080	GO-mf	N-acetyltransferase activity	JGI	N/A	IEA
PTHR13355	Panther	GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE	JGI	N/A	IEA
PF00583	PFAM	Acetyltransferase (GNAT) family	JGI	N/A	IEA

Proteins Associated with Glyma.18g216900

Locus	Gene Symbol	Protein Name
	TAP1	acetyltransferase TAP1

Expression Patterns of Glyma.18g216900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18g216900 not represented in the dataset	Glyma.18g216900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.18g216900

Paralog	Evidence	Comments
Glyma.09g272400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g216900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma18g44940	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.18g216900

Limit To All Plant Sequences

>Glyma.18g216900.2 sequence-type=transcript locus=Glyma.18g216900 ID=Glyma.18g216900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTATCTTGTACCACTCTTTTTTTTATGCTTACTTTTAGTATTGATTATTACTTATACATGTGTTTATGTTGTTTCAGGTTCTCAGTTGTTCAATTTCATGCCAATTATCCACTGTCTACTCAAACTCAATTCAACCAGAAAGTTCAAGTCTTTTCAGCTCAAGGCTGGATTCTGGGAATCAATTAAATCTGGGTTGATGAAGAATAACTCAATGCAAGTCATTGATCCACCCTCCACAGATGAAGAAAATGTAGAGCCTTTGTCTCAAGATTTTGTCCTTGTGGAAAAGACAGAACCCGATGGTACAATTGAGCAAATAATATTCTCTTCAGGTGGAGATGTTGATGTTTATGATCTTCAAGCTCTTTGTGACAAGGTAGGGTGGCCGCGTAGACCGTTGTCAAAATTAGCTGCCGCTTTGAAAAATAGTTATATAGTAGCCTCACTACATTCTATAAGAAAGTCACATGGGTCAGAGGGGAATGAACAGAAGAGATTAATTGGCATGGCCCGTGCTACGTCTGACCATGCCTTCAATGCCACAATTTGGGATGTCCTAGTTGATCCAGGCTACCAGGGCCAAGGTCTTGGTAAAGCTCTTATAGAGAAACTGATTCGAACTCTTCTGCAAAGGGACATTGGCAATATAACTCTGTTTGCAGATAGTCAAGTTGTGGAATTTTATCGCAATTTAGGCTTTGAAGCTGACCCAGAGGGCATAAAAGGCATGTTTTGGTACCCGAACCACTAATTGCAACCCTACCAAAGCTTTTTTTGCTTAGGTCAACAATGCAATTTGCAACCATGAAGTATACAAGAGAGAAGCAGTGACAAATTTATCTATCACTCATAATATGAAAGTAGAAAGGTTCAATCCAGTAATTATTGTGTTTTAGGTTTTATAAGTTATTCATTTTTCCAAAGTTTTGCTACTTTTCAAACAGATGATCATGATGAGGCTTTGATTAGTAGGCCTGCTTTATATTTGAAAAACATAAAATCCACCACTTACTGACTGTGGTTTTTTTTTTTTTCTTCATTTTTGGATGAATTATTGTACTATATAAGGTTAGTGGTTTTCTTCGGGCGTTTCTATGTTGAGTCTTAATAGGCATGAATTGTCAATGTAAAAGTTTCAAAATTATTATTTG

>Glyma.18g216900.3 sequence-type=transcript locus=Glyma.18g216900 ID=Glyma.18g216900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTGTCAACTTCTTGAGAGAGATTTAGAAAAATGAGCTGTTatgtctctaaaattaagtgagagcaagccctgacacagtggtaaagttctgtcttggtaaccagttggtcatgggttcgaatccggaaacaacctctttgcatatgcaaagGTTGATGAAGAATAACTCAATGCAAGTCATTGATCCACCCTCCACAGATGAAGAAAATGTAGAGCCTTTGTCTCAAGATTTTGTCCTTGTGGAAAAGACAGAACCCGATGGTACAATTGAGCAAATAATATTCTCTTCAGGTGGAGATGTTGATGTTTATGATCTTCAAGCTCTTTGTGACAAGGTAGGGTGGCCGCGTAGACCGTTGTCAAAATTAGCTGCCGCTTTGAAAAATAGTTATATAGTAGCCTCACTACATTCTATAAGAAAGTCACATGGGTCAGAGGGGAATGAACAGAAGAGATTAATTGGCATGGCCCGTGCTACGTCTGACCATGCCTTCAATGCCACAATTTGGGATGTCCTAGTTGATCCAGGCTACCAGGGCCAAGGTCTTGGTAAAGCTCTTATAGAGAAACTGATTCGAACTCTTCTGCAAAGGGACATTGGCAATATAACTCTGTTTGCAGATAGTCAAGTTGTGGAATTTTATCGCAATTTAGGCTTTGAAGCTGACCCAGAGGGCATAAAAGGCATGTTTTGGTACCCGAACCACTAATTGCAACCCTACCAAAGCTTTTTTTGCTTAGGTCAACAATGCAATTTGCAACCATGAAGTATACAAGAGAGAAGCAGTGACAAATTTATCTATCACTCATAATATGAAAGTAGAAAGGTTCAATCCAGTAATTATTGTGTTTTAGGTTTTATAAGTTATTCATTTTTCCAAAGTTTTGCTACTTTTCAAACAGATGATCATGATGAGGCTTTGATTAGTAGGCCTGCTTTATATTTGAAAAACATAAAATCCACCACTTACTGACTGTGGTTTTTTTTTTTTTCTTCATTTTTGGATGAATTATTGTACTATATAAGGTTAGTGGTTTTCTTCGGGCGTTTCTATGTTGAGTCTTAATAGGCATGAATTGTCAATGTAAAAGTTTCAAAATTATTATTTG

Coding sequences of Glyma.18g216900

Limit To All Plant Sequences

>Glyma.18g216900.1 sequence-type=CDS polypeptide=Glyma.18g216900.1.p locus=Glyma.18g216900 ID=Glyma.18g216900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCAATGCTATCTCTTCTTCGTTCTCAGTTGTTCAATTTCATGCCAATTATCCACTGTCTACTCAAACTCAATTCAACCAGAAAGTTCAAGTCTTTTCAGCTCAAGGCTGGATTCTGGGAATCAATTAAATCTGGGTTGATGAAGAATAACTCAATGCAAGTCATTGATCCACCCTCCACAGATGAAGAAAATGTAGAGCCTTTGTCTCAAGATTTTGTCCTTGTGGAAAAGACAGAACCCGATGGTACAATTGAGCAAATAATATTCTCTTCAGGTGGAGATGTTGATGTTTATGATCTTCAAGCTCTTTGTGACAAGGTAGGGTGGCCGCGTAGACCGTTGTCAAAATTAGCTGCCGCTTTGAAAAATAGTTATATAGTAGCCTCACTACATTCTATAAGAAAGTCACATGGGTCAGAGGGGAATGAACAGAAGAGATTAATTGGCATGGCCCGTGCTACGTCTGACCATGCCTTCAATGCCACAATTTGGGATGTCCTAGTTGATCCAGGCTACCAGGGCCAAGGTCTTGGTAAAGCTCTTATAGAGAAACTGATTCGAACTCTTCTGCAAAGGGACATTGGCAATATAACTCTGTTTGCAGATAGTCAAGTTGTGGAATTTTATCGCAATTTAGGCTTTGAAGCTGACCCAGAGGGCATAAAAGGCATGTTTTGGTACCCGAACCACTAA

>Glyma.18g216900.2 sequence-type=CDS polypeptide=Glyma.18g216900.2.p locus=Glyma.18g216900 ID=Glyma.18g216900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCAATTATCCACTGTCTACTCAAACTCAATTCAACCAGAAAGTTCAAGTCTTTTCAGCTCAAGGCTGGATTCTGGGAATCAATTAAATCTGGGTTGATGAAGAATAACTCAATGCAAGTCATTGATCCACCCTCCACAGATGAAGAAAATGTAGAGCCTTTGTCTCAAGATTTTGTCCTTGTGGAAAAGACAGAACCCGATGGTACAATTGAGCAAATAATATTCTCTTCAGGTGGAGATGTTGATGTTTATGATCTTCAAGCTCTTTGTGACAAGGTAGGGTGGCCGCGTAGACCGTTGTCAAAATTAGCTGCCGCTTTGAAAAATAGTTATATAGTAGCCTCACTACATTCTATAAGAAAGTCACATGGGTCAGAGGGGAATGAACAGAAGAGATTAATTGGCATGGCCCGTGCTACGTCTGACCATGCCTTCAATGCCACAATTTGGGATGTCCTAGTTGATCCAGGCTACCAGGGCCAAGGTCTTGGTAAAGCTCTTATAGAGAAACTGATTCGAACTCTTCTGCAAAGGGACATTGGCAATATAACTCTGTTTGCAGATAGTCAAGTTGTGGAATTTTATCGCAATTTAGGCTTTGAAGCTGACCCAGAGGGCATAAAAGGCATGTTTTGGTACCCGAACCACTAA

>Glyma.18g216900.3 sequence-type=CDS polypeptide=Glyma.18g216900.3.p locus=Glyma.18g216900 ID=Glyma.18g216900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTTCGAATCCGGAAACAACCTCTTTGCATATGCAAAGGTTGATGAAGAATAACTCAATGCAAGTCATTGATCCACCCTCCACAGATGAAGAAAATGTAGAGCCTTTGTCTCAAGATTTTGTCCTTGTGGAAAAGACAGAACCCGATGGTACAATTGAGCAAATAATATTCTCTTCAGGTGGAGATGTTGATGTTTATGATCTTCAAGCTCTTTGTGACAAGGTAGGGTGGCCGCGTAGACCGTTGTCAAAATTAGCTGCCGCTTTGAAAAATAGTTATATAGTAGCCTCACTACATTCTATAAGAAAGTCACATGGGTCAGAGGGGAATGAACAGAAGAGATTAATTGGCATGGCCCGTGCTACGTCTGACCATGCCTTCAATGCCACAATTTGGGATGTCCTAGTTGATCCAGGCTACCAGGGCCAAGGTCTTGGTAAAGCTCTTATAGAGAAACTGATTCGAACTCTTCTGCAAAGGGACATTGGCAATATAACTCTGTTTGCAGATAGTCAAGTTGTGGAATTTTATCGCAATTTAGGCTTTGAAGCTGACCCAGAGGGCATAAAAGGCATGTTTTGGTACCCGAACCACTAA

Predicted protein sequences of Glyma.18g216900

Limit To All Plant Sequences

>Glyma.18g216900.1.p sequence-type=predicted peptide transcript=Glyma.18g216900.1 locus=Glyma.18g216900 ID=Glyma.18g216900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSMLSLLRSQLFNFMPIIHCLLKLNSTRKFKSFQLKAGFWESIKSGLMKNNSMQVIDPPSTDEENVEPLSQDFVLVEKTEPDGTIEQIIFSSGGDVDVYDLQALCDKVGWPRRPLSKLAAALKNSYIVASLHSIRKSHGSEGNEQKRLIGMARATSDHAFNATIWDVLVDPGYQGQGLGKALIEKLIRTLLQRDIGNITLFADSQVVEFYRNLGFEADPEGIKGMFWYPNH*

>Glyma.18g216900.2.p sequence-type=predicted peptide transcript=Glyma.18g216900.2 locus=Glyma.18g216900 ID=Glyma.18g216900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPIIHCLLKLNSTRKFKSFQLKAGFWESIKSGLMKNNSMQVIDPPSTDEENVEPLSQDFVLVEKTEPDGTIEQIIFSSGGDVDVYDLQALCDKVGWPRRPLSKLAAALKNSYIVASLHSIRKSHGSEGNEQKRLIGMARATSDHAFNATIWDVLVDPGYQGQGLGKALIEKLIRTLLQRDIGNITLFADSQVVEFYRNLGFEADPEGIKGMFWYPNH*

>Glyma.18g216900.3.p sequence-type=predicted peptide transcript=Glyma.18g216900.3 locus=Glyma.18g216900 ID=Glyma.18g216900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGSNPETTSLHMQRLMKNNSMQVIDPPSTDEENVEPLSQDFVLVEKTEPDGTIEQIIFSSGGDVDVYDLQALCDKVGWPRRPLSKLAAALKNSYIVASLHSIRKSHGSEGNEQKRLIGMARATSDHAFNATIWDVLVDPGYQGQGLGKALIEKLIRTLLQRDIGNITLFADSQVVEFYRNLGFEADPEGIKGMFWYPNH*

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