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Report for Sequence Feature Glyma.18g213900

Feature Type:gene_model
Chromosome:Gm18
Start:50082939
stop:50086770
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g213900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G08740.1AT elongation factor P (EF-P) family protein JGI N/AIEA
GO:0006414GO-bp translational elongation EnsemblGenomesN/AIEA
GO:0006414GO-bp translational elongation JGI N/AIEA
GO:0043043GO-bp peptide biosynthetic process EnsemblGenomesN/AIEA
GO:0043043GO-bp peptide biosynthetic process JGI N/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm JGI N/AIEA
GO:0003746GO-mf translation elongation factor activity EnsemblGenomesN/AIEA
GO:0003746GO-mf translation elongation factor activity JGI N/AIEA
PF01132PFAM Elongation factor P (EF-P) OB domain JGI N/AIEA
PF08207PFAM Elongation factor P (EF-P) KOW-like domain JGI N/AIEA
PF09285PFAM Elongation factor P, C-terminal JGI N/AIEA

Expression Patterns of Glyma.18g213900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g213900
ParalogEvidenceComments
Glyma.09g275000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g213900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g44620 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g213900
>Glyma.18g213900.1 sequence-type=CDS polypeptide=Glyma.18g213900.1.p locus=Glyma.18g213900 ID=Glyma.18g213900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGGCGGGAACTGCAACCTTGAAGCTTAGCCTCTCCGCTTTTTCTTCTCCAATGTCAAATTTCAGCGCTTCCTCTTCATTCCCCTCTCGTCTCCCAATGCGAACCCCTTCTTCTTCTAAACCTCGATTTCTCAGGATTTACGCCTTGACCAGCAACGACATCAAGGTCGGCACCAACCTCGAAGTCGATGGTGCTCCTTGGCGTGTGTTAGAGTTTCTTCACGTTAAGCCGGGAAAAGGCGCGGCGTTTGTCAGGACCAAGATGAAGAATTATATTACGGGGAACACGGTGGAGAAAACATTTAGAGCGGGAAGCTCGATTGAGCAAGCAGATGTATTCAAGGAAACAAAGCAGTTTACATATAAAGATGGTGCTCAATTTGTCTTCATGGACTTGAATACATATGAGGAGTTTCGTCTGGGTGAAAAGGAAATTGGAGACAGAACAAAGTGGCTAAAAGAAGGAATGGACTGCAATTTGCTGTTGTGGAATGGAAAAGTTATTGATGTTGAACTCCCTATCACAATCAAGCTTGCTGTAGTTGATGTGGATCCAGGACTTAAGGGTGACACAGCCCAAGGTGGAACAAAACCAGCCACACTCGACACCGGCGCTGTTGTCAATGTCCCACTCTTTGTAAATGTCGGTGATGAAATATTGGTTGATTCAAGAACTGGGCAGTACATGAGCCGTGCTTAA
Predicted protein sequences of Glyma.18g213900
>Glyma.18g213900.1.p sequence-type=predicted peptide transcript=Glyma.18g213900.1 locus=Glyma.18g213900 ID=Glyma.18g213900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVAGTATLKLSLSAFSSPMSNFSASSSFPSRLPMRTPSSSKPRFLRIYALTSNDIKVGTNLEVDGAPWRVLEFLHVKPGKGAAFVRTKMKNYITGNTVEKTFRAGSSIEQADVFKETKQFTYKDGAQFVFMDLNTYEEFRLGEKEIGDRTKWLKEGMDCNLLLWNGKVIDVELPITIKLAVVDVDPGLKGDTAQGGTKPATLDTGAVVNVPLFVNVGDEILVDSRTGQYMSRA*






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