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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G62640.1 | AT | 3-ketoacyl-acyl carrier protein synthase III | JGI | N/A | IEA |
| GO:0006633 | GO-bp | fatty acid biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0006633 | GO-bp | fatty acid biosynthetic process | JGI | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008610 | GO-bp | lipid biosynthetic process | JGI | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0004315 | GO-mf | 3-oxoacyl-[acyl-carrier-protein] synthase activity | EnsemblGenomes | N/A | IEA |
| GO:0004315 | GO-mf | 3-oxoacyl-[acyl-carrier-protein] synthase activity | JGI | N/A | IEA |
| GO:0016746 | GO-mf | transferase activity, transferring acyl groups | JGI | N/A | IEA |
| GO:0016747 | GO-mf | transferase activity, transferring acyl groups other than amino-acyl groups | JGI | N/A | IEA |
| PTHR11877 | Panther | HYDROXYMETHYLGLUTARYL-COA SYNTHASE | JGI | N/A | IEA |
| PTHR11877:SF13 | Panther | HYDROXYMETHYLGLUTARYL-COA SYNTHASE A | JGI | N/A | IEA |
| PF08541 | PFAM | 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal | JGI | N/A | IEA |
| PF08545 | PFAM | 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III | JGI | N/A | IEA |
| PWY-4381 | SoyCyc9 | fatty acid biosynthesis initiation I | Plant Metabolic Network | ISS | |
| PWY-5156 | SoyCyc9 | superpathway of fatty acid biosynthesis II (plant) | Plant Metabolic Network | ISS | |
| GN7V-56900 | SoyCyc9-rxn | β-ketoacyl-acyl-carrier-protein synthase III | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| KASIII-3 | beta-ketoacyl-acyl carrier protein synthase III |
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Glyma.18g211400 not represented in the dataset |
Glyma.18g211400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.09g277400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma18g44350 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.18g211400.1 sequence-type=CDS polypeptide=Glyma.18g211400.1.p locus=Glyma.18g211400 ID=Glyma.18g211400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGAATGCATCTGGGTTCTTCAGCCCTTCGGTTCCCCACTTCAAAGTGAGGGTTAAGCCTCTCACCACTGCCATTGGATTCTCCGCCAAAGTCGTTTGCGTTGGAAACATCGAAGGAGCTGAAAAACATGCTTCCACCGTTTCCCCTTCTTCCCAATCTCCAATACCCAGGCTTGTCAGCAAAGGGTGCAAGTTAGTTGGATGTGGCTCTGCTGTGCCAGCTCTTCAGATTTCTAATGACGATCTTTCGAAAATGGTTGATACTAATGATGAATGGATATCTGTTCGCACCGGGATTCGTAGACGGCGTGTTCTTTCAGGCAAAGATAACTTGACAGGTTTAGCAGTAGAGGCAGCTAGGAAAGCTCTTGAGATGGCAAAGGTAGACCCTGATGATCTTGACCTAATATTGATGTGCACATCTACGCCAGAGGATCTTTTTGGTAGTGCTCCACAGATTCAAAAACAACTTGGCTGCAAAGCAAATCCATTGTCTTATGACATTACAGCTGCATGTAGTGGATTTGTGTTGGGTTTAATATCAGCTGCTTGTCACATTAGGGGAGGTGGATTTAATAATGTTCTAGTTATTGGGGCGGATGCTCTCTCACGATATGTTGATTGGACAGACAGAGGGACCTGTATTCTTTTTGGGGATGCTGCTGGTGCTGTACTAGTACAGGCCTGCAACAGTGAAGAAGATGGTTTATTTGGTTTTGATTTGCATAGTGATGGCAGTGGTCAAAGGCACTTGAATGCTTCCATTAAAGAAAATGAGTCAAATAATGCATTGGATTCAAATGGTTCTGTGTTTGGCTTTCCTCCCAAGCAGTCCTCATATTCATGCATTCAAATGAACGGCAAAGAAGTCTTTCGCTTTGCTGTACGATGTGTACCACAGTCAATTGAATCTGCCCTTGAAAAGGCTGGTCTCCCTGCATCTAGCATTGATTGGCTACTTCTCCATCAGGCAAACCAGAGGATTATTGATGCAGTTGCCACTCGGTTAGAACTCCCCTCAGAACGGGTGATATCAAACTTAGCTAATTATGGTAACACAAGTGCAGCTTCCATTCCCTTGGCTTTAGATGAAGCGGTTCGAAGTGGTAAGGTTAAGGCAGGCCAAACTATTGCAACGGCCGGCTTCGGTGCCGGTCTTACTTGGGGTTCAGCAATTATTCGTTGGGGCTGA
>Glyma.18g211400.1.p sequence-type=predicted peptide transcript=Glyma.18g211400.1 locus=Glyma.18g211400 ID=Glyma.18g211400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MANASGFFSPSVPHFKVRVKPLTTAIGFSAKVVCVGNIEGAEKHASTVSPSSQSPIPRLVSKGCKLVGCGSAVPALQISNDDLSKMVDTNDEWISVRTGIRRRRVLSGKDNLTGLAVEAARKALEMAKVDPDDLDLILMCTSTPEDLFGSAPQIQKQLGCKANPLSYDITAACSGFVLGLISAACHIRGGGFNNVLVIGADALSRYVDWTDRGTCILFGDAAGAVLVQACNSEEDGLFGFDLHSDGSGQRHLNASIKENESNNALDSNGSVFGFPPKQSSYSCIQMNGKEVFRFAVRCVPQSIESALEKAGLPASSIDWLLLHQANQRIIDAVATRLELPSERVISNLANYGNTSAASIPLALDEAVRSGKVKAGQTIATAGFGAGLTWGSAIIRWG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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