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Report for Sequence Feature Glyma.18g207300

Feature Type:gene_model
Chromosome:Gm18
Start:49099850
stop:49101963
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g207300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G01650.1AT Tautomerase/MIF superfamily protein JGI N/AIEA
AT5G01650.2AT Tautomerase/MIF superfamily protein JGI N/AIEA
KOG1759 KOG Macrophage migration inhibitory factor JGI N/AIEA
PTHR11954Panther MACROPHAGE MIGRATION INHIBITORY FACTOR RELATED JGI N/AIEA
PTHR11954:SF3Panther JGI N/AIEA
PF01187PFAM Macrophage migration inhibitory factor (MIF) JGI N/AIEA
PWY-6498SoyCyc9 eumelanin biosynthesis Plant Metabolic Network ISS
GN7V-67271SoyCyc9-rxn phenylpyruvate tautomerase Plant Metabolic Network ISS

Expression Patterns of Glyma.18g207300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18g207300 not represented in the dataset
Glyma.18g207300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g207300
ParalogEvidenceComments
Glyma.07g156500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g207300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g43816 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g207300
>Glyma.18g207300.2 sequence-type=transcript locus=Glyma.18g207300 ID=Glyma.18g207300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTACCTTTCACCTTTGACATACAACAGCTGCAGAGTGAAACGATGCCGTGCCTCAACCTCTCCACCAACGTTAACCTAGACGGCGTCGACACCTCCTCCATTCTCTCCGAAGCCACCTCAACCGTCGCCAGCATCATCGGCAAACCCGAGGCCTATGTGATGATTGTATTGAAAGGATCAGTGCCTATATCTCATGGTGGGAGTGAGCAGCCAGCAGCTTATGGTGAATTGGTGTCCATTGGTGGTCTTAGCCCTGACGTGAACAAGAAACTTAGTGCTGGCATTGCTTCAATTCTCGAAAACAAGTTGTCTGTGCCAAAGTCGCGATTCTACTTGAAGTTTTATGACACCAAGGGTTCCAACTTTGGATGGAATGGATCTACATTCTGAATTCCGAGTTATTTTGGTAATGATGCCATGGATGTCGGATGAACTCGTTATTCTGTTTTTGAACTTTTTTATCTGTAAAAAGTACTCTGAATTTTAATACCCCATTTTGAGGACATTATGCCATCGTAATTGGATTATGTTCAAGGACAACTGTTGGTCGTATATGTTCATGATGTTATCTCTGGACAAACATTATCTGGTGACCTTGAGATGAGCGTCATTTTAGTGGTAAATTAGAATTATGCATGGTTAAACTTGAGACTTTGTTATTTTGTAGTTA
Coding sequences of Glyma.18g207300
>Glyma.18g207300.1 sequence-type=CDS polypeptide=Glyma.18g207300.1.p locus=Glyma.18g207300 ID=Glyma.18g207300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCGTGCCTCAACCTCTCCACCAACGTTAACCTAGACGGCGTCGACACCTCCTCCATTCTCTCCGAAGCCACCTCAACCGTCGCCAGCATCATCGGCAAACCCGAGGCCTATGTGATGATTGTATTGAAAGGATCAGTGCCTATATCTCATGGTGGGAGTGAGCAGCCAGCAGCTTATGGTGAATTGGTGTCCATTGGTGGTCTTAGCCCTGACGTGAACAAGAAACTTAGTGCTGGCATTGCTTCAATTCTCGAAAACAAGTTGTCTGTGCCAAAGTCGCGATTCTACTTGAAGTTTTATGACACCAAGGCCCATCAGAGTCAAGAATATGCACAATGTTTGCATGCTTTACACCAGCACTAG

>Glyma.18g207300.2 sequence-type=CDS polypeptide=Glyma.18g207300.2.p locus=Glyma.18g207300 ID=Glyma.18g207300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCGTGCCTCAACCTCTCCACCAACGTTAACCTAGACGGCGTCGACACCTCCTCCATTCTCTCCGAAGCCACCTCAACCGTCGCCAGCATCATCGGCAAACCCGAGGCCTATGTGATGATTGTATTGAAAGGATCAGTGCCTATATCTCATGGTGGGAGTGAGCAGCCAGCAGCTTATGGTGAATTGGTGTCCATTGGTGGTCTTAGCCCTGACGTGAACAAGAAACTTAGTGCTGGCATTGCTTCAATTCTCGAAAACAAGTTGTCTGTGCCAAAGTCGCGATTCTACTTGAAGTTTTATGACACCAAGGGTTCCAACTTTGGATGGAATGGATCTACATTCTGA
Predicted protein sequences of Glyma.18g207300
>Glyma.18g207300.1.p sequence-type=predicted peptide transcript=Glyma.18g207300.1 locus=Glyma.18g207300 ID=Glyma.18g207300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPCLNLSTNVNLDGVDTSSILSEATSTVASIIGKPEAYVMIVLKGSVPISHGGSEQPAAYGELVSIGGLSPDVNKKLSAGIASILENKLSVPKSRFYLKFYDTKAHQSQEYAQCLHALHQH*

>Glyma.18g207300.2.p sequence-type=predicted peptide transcript=Glyma.18g207300.2 locus=Glyma.18g207300 ID=Glyma.18g207300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPCLNLSTNVNLDGVDTSSILSEATSTVASIIGKPEAYVMIVLKGSVPISHGGSEQPAAYGELVSIGGLSPDVNKKLSAGIASILENKLSVPKSRFYLKFYDTKGSNFGWNGSTF*






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