SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.18g205000

Feature Type:gene_model
Chromosome:Gm18
Start:48865940
stop:48867991
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g205000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G01550.1AT lectin receptor kinase a4.1 JGI N/AIEA
GO:0006468GO-bp protein phosphorylation EnsemblGenomesN/AIEA
GO:0006468GO-bp protein phosphorylation JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0030246GO-mf carbohydrate binding EnsemblGenomesN/AIEA
GO:0030246GO-mf carbohydrate binding JGI N/AIEA
KOG1187 KOG Serine/threonine protein kinase JGI N/AIEA
PTHR24420Panther LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE JGI N/AIEA
PTHR24420:SF435Panther JGI N/AIEA
PF00069PFAM Protein kinase domain JGI N/AIEA
PF00139PFAM Legume lectin domain JGI N/AIEA

Expression Patterns of Glyma.18g205000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g205000
ParalogEvidenceComments
Glyma.07g154100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g205000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g43570 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g205000
>Glyma.18g205000.1 sequence-type=CDS polypeptide=Glyma.18g205000.1.p locus=Glyma.18g205000 ID=Glyma.18g205000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCTATACCTCTTATGGCTTCTCCAACTCTTCTTGTCTTCCTCCTATTTCTCTCTCTCTTACACCAAGTTGCCTCCAAGGCTGTGATCTTTGAAGGATTCGATGAAAACAGTGAACTCAATCTTCAAGGATCTTCCATCATCAAAACCAGCCGTTTGCTTAAACTCACCAACAGATCAACCAATATTGTAGGCCATGCATTCTATGCCACACCCTTCCAAATGCTTAACAAAAACAACACAAACCCTCCACTCCAACCCTATGCTTATTCCTTCAGCACCAATTTTGTTTTTTCAATTGTGTCCCCAATTTCTGGCTCTGGTGGCTTTGGCCTTGCCTTCACCATAGCACCCTCAACACAGTTTCCTGGGGCTGAGGCTGGCCATTATCTTGGTCTTGTCAACTCCGCCAATGATGGGAATGACTCAAACCACATTTTTGCAGTTGAATTTGACACAGTAAATGGTTACAAAGATGACTCAGACACTGAAGGAAACCATGTTGGGGTCAACATCAATGGCATGGACTCAATCATTACTGAACCAGCTGCATACATTGAAGAGGGCACTGATAATGTAAAGGAAGATTTCAGAATGGCTAAGGTTGATGCTGTCCAAGTTTGGATAGAATATGATGGTGAAAAGAAAACTCTGAATGTAACAATAGCTCCTTTGCCATTACCAAGGCCAAGCAAACCAATTATAATGAATCATAACATTGATCTCTACAATGTTATGGAAGAAAGCATGTATGTTGGTTTCTCAGCATCAACAGGCCAAGAAACAAGCTCTCACTATCTTCTAGGATGGAGTTTTGTAGTGAATGGTGTTGCCCCTCTACTGAACATTTCCAACCTTCCAAAGCCACCACCAAAGGAGAAAGAACCAACCTCATTTCCTTGGGTCAATGTTGCAATTGGCATCTTGTCTGGTTTGACTTTTTGCCTTTTGTGTATTCTGTTTTGCCTAACATGTTATAGGAGATACATGGATTTTGAGGTTCTTGAGGACTGGGAGATGGATTGTCCTCACAGGTTTAGGTACAAAGATCTTCACATAGCCACAAAGGGGTTCATAGAGAGCCAGCTCATTGGAGTTGGAGGCTTTGGTGCTGTGTACAAAGGTGTGTTGCCTTCCACAGGAGCTGAGGTTGCTGTCAAGAGGATTGTGAGAAGCCCTTTTCATGGAATGAGGGAATTTGCAGCTGAGATTGAAAGCTTGGGAAAGTTAAGGCACAAGAATTTGGTGAACCTTCAAGGTTGGTGCAAGAAAAAGAATGATCTACTCTTAGTCTATGATTTCATTCCAAACGGAAGCCTTGATTATGTCCTATATAAACCCAACAACAACAATAACTTTGTTTTGAATTGGGGGCAAAGATTCAACATTCTCAAAGACATCAGTGCTGGACTATTGTACCTGCATGAAGAGTGGGAGCAAGTGGTGATCCATAGAGATGTGAAAACTAGCAACATTTTGATTGATGCACACTTGAATGCACGTTTAGGTGATTTTGGACTTGCAAGGCTCTATAACCATGGTCAAGTGTCACACACAACAAGTGTGGTTGGGACTATTGGTTACATTGCACCAGAGTTAACTCGCACTGGAAAGGCTTGTGCAAACACAGATGTGTATTCATTTGGGGTTGTGCTCCTTGAAGTGGCCACAGGTAAGAGGCCTCTTGATTCGGATCAGTTTTTCTTGGTGGAGTGGGTTATTGAGAATTACCATTTGGGTCAAATTCTTGAGGTGGTTGATCCTAAGCTTGATTCACTTTATGATGAGGAAGAAGTTGAGTTGGTTCTGAAATTGGGTCTACTTTGCACTCAACATAGAGCAGATTATAGACCTTCCATGAAACAAGTCACAAGGTACTTGAACTTTGATGACCCTCTTCCTGATATTGCTGATTGGGGACATGATGTTTCTGGCAGCAGTAGATTGAGTGAAGGTTTCTTAGAAGTCACGTCTTCTATGGGAACTGTTGAAGCATTAGGGTATTTGTCTTCCATTAGCATGAGTACTAAGTCCATAGATGCTGGTAGATAG
Predicted protein sequences of Glyma.18g205000
>Glyma.18g205000.1.p sequence-type=predicted peptide transcript=Glyma.18g205000.1 locus=Glyma.18g205000 ID=Glyma.18g205000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPIPLMASPTLLVFLLFLSLLHQVASKAVIFEGFDENSELNLQGSSIIKTSRLLKLTNRSTNIVGHAFYATPFQMLNKNNTNPPLQPYAYSFSTNFVFSIVSPISGSGGFGLAFTIAPSTQFPGAEAGHYLGLVNSANDGNDSNHIFAVEFDTVNGYKDDSDTEGNHVGVNINGMDSIITEPAAYIEEGTDNVKEDFRMAKVDAVQVWIEYDGEKKTLNVTIAPLPLPRPSKPIIMNHNIDLYNVMEESMYVGFSASTGQETSSHYLLGWSFVVNGVAPLLNISNLPKPPPKEKEPTSFPWVNVAIGILSGLTFCLLCILFCLTCYRRYMDFEVLEDWEMDCPHRFRYKDLHIATKGFIESQLIGVGGFGAVYKGVLPSTGAEVAVKRIVRSPFHGMREFAAEIESLGKLRHKNLVNLQGWCKKKNDLLLVYDFIPNGSLDYVLYKPNNNNNFVLNWGQRFNILKDISAGLLYLHEEWEQVVIHRDVKTSNILIDAHLNARLGDFGLARLYNHGQVSHTTSVVGTIGYIAPELTRTGKACANTDVYSFGVVLLEVATGKRPLDSDQFFLVEWVIENYHLGQILEVVDPKLDSLYDEEEVELVLKLGLLCTQHRADYRPSMKQVTRYLNFDDPLPDIADWGHDVSGSSRLSEGFLEVTSSMGTVEALGYLSSISMSTKSIDAGR*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo