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Report for Sequence Feature Glyma.18g204200

Feature Type:gene_model
Chromosome:Gm18
Start:48697660
stop:48700908
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g204200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G54960.1AT pyruvate decarboxylase-2 JGI N/AIEA
GO:0000287GO-mf magnesium ion binding EnsemblGenomesN/AIEA
GO:0000287GO-mf magnesium ion binding JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity JGI N/AIEA
GO:0016831GO-mf carboxy-lyase activity EnsemblGenomesN/AIEA
GO:0030976GO-mf thiamine pyrophosphate binding EnsemblGenomesN/AIEA
GO:0030976GO-mf thiamine pyrophosphate binding JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG1184 KOG Thiamine pyrophosphate-requiring enzyme JGI N/AIEA
PTHR18968Panther THIAMINE PYROPHOSPHATE ENZYMES JGI N/AIEA
PTHR18968:SF4Panther PYRUVATE DECARBOXYLASE ISOZYME 1-RELATED JGI N/AIEA
PF00205PFAM Thiamine pyrophosphate enzyme, central domain JGI N/AIEA
PF02775PFAM Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JGI N/AIEA
PF02776PFAM Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JGI N/AIEA
PWY-5486SoyCyc9 pyruvate fermentation to ethanol II Plant Metabolic Network ISS
PWY-7345SoyCyc9 superpathway of anaerobic sucrose degradation Plant Metabolic Network ISS
GN7V-41324SoyCyc9-rxn pyruvate decarboxylase Plant Metabolic Network ISS

Expression Patterns of Glyma.18g204200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g204200
ParalogEvidenceComments
Glyma.07g153100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g204200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g43460 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g204200
>Glyma.18g204200.1 sequence-type=CDS polypeptide=Glyma.18g204200.1.p locus=Glyma.18g204200 ID=Glyma.18g204200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACACCAAGATAGGTTCACTAGACGCGCCCAAGCCCAACAGCAACGACGTCGTATCATGCAACCTCACCAGCAGCGCCGCCATCCAGCCCTGCTTGCCGGCGACGGTGATCAACGGCGCCGGCTGTAGTGACTCCACCTTGGGCGGCCACCTGGCCCGCCGGCTGGTGGAAATCGGCGTCACCGACGTGTTCTCCGTTCCCGGGGACTTCAACCTGACGCTGCTGGACCACCTCATCGCGGAGCCGGCGCTGCACCTGGTCGGGTGCTGCAACGAGCTCAACGCCGGGTACGCCGCCGACGGCTACGCGCGCGCCAGGGGAGTCGGCGCGTGCGTGGTGACGTTCACCGTCGGCGGCCTCAGCGTGCTCAACGCCATCGCCGGAGCGTACAGCGAGAACTTGCCGCTAATTTGCATCGTCGGTGGGCCCAACTCCAACGACTACGGCACCAGTCGGATCCTCCATCACACCATCGGGTTACCCGATTTCAGCCAGGAGCTAAGGTGCTTTCAGACCATTACTTGCTTCCAGGCTGTGGTGAATAACTTGGAAGATGCTCATGAGTTGATTGATACAGCAATCTCAACTGCGCTGAAAGAAAGCAAACCTGTGTATATAAGCATTAGCTGTAACTTGCCTGGGATTCCTCACCCCACTTTCAGTCGTGACCCTGTTCGTTTTTCATTGTCTCCAAGATTGAGTAATAAGATGGGGTTGGAGGCCGCAGTGGAGGCAGCGGCGGAATTCCTTAACAAGGCAGTGAAACCAGTGCTGGTAGGTGGTCCTAAACTGAGGGTGGCAACAGCATCTGATGCCTTTGTCGAACTGGCTGATGCGTGTGGTTATGCGCTTGCTGTGATGCCGTCGGCTAAAGGGCAGGTTCCAGAGCACCATCCCCATTTTATCGGAACTTATTGGGGTGCTGTGAGCACTGCCTTCTGTGCTGAGATTGTGGAGTCTGCGGATGCATACTTGTTTGCTGGTCCAATTTTTAATGACTACAGCTCTGTGGGGTATTCACTTCTTCTCAAGAAGGAGAAGGCGATCATTGTGCAGCCTGATCGGGTTGTGATCGCGAATGGACCTGCTTTTGGGTGTGTGCTGATGAAGGATTTCCTCAAGGCACTCGCAAAGCGCCTCAAGCACAACAATACTGCATATGAAAATTACCACAGGATATTTGTCCCTGATGGGCATCCTTTGAAGGCTGCACCCAGAGAGCCTTTGAGGGTTAATGTTCTGTTCCAACATATACAAAATATGCTGTCTGGTGAAACTGCTGTAATTGCTGAGACAGGGGACTCCTGGTTTAATTGCCAAAAGCTGAAATTGCCAAAGGCATGTGGGTATGAGTTCCAAATGCAATATGGTTCAATTGGATGGTCTGTTGGTGCTACTCTGGGTTATGCTCAAGCCGTTCCTGAGAAGCGAGTGATTGCCTGCATTGGTGATGGAAGTTTTCAGGTGACTGCCCAAGATGTATCGACAATGTTACGGTGCGGGCAAAAAACCATCATCTTTCTGATCAACAATGGTGGATACACCATCGAGGTTGAAATTCATGATGGGCCGTACAATGTGATTAAGAACTGGAATTACACTGGGTTGATTGATGCAATCCACAATGGTGAAGGGAAATGCTGGACTGCCAAGGTGTTCTGTGAAGAGGAGCTAGTTGAAGCAATTGCCACAGCCACAGGACCCAAGAAAGACTCCTTATGCTTCATTGAGGTGATTGTTCATAAGGATGACACCAGTAAAGAATTGCTTGAATGGGGCTCAAGGGTTTCTGCTGCCAATAGCCGTCCTCCCAATCCTCAGTAA
Predicted protein sequences of Glyma.18g204200
>Glyma.18g204200.1.p sequence-type=predicted peptide transcript=Glyma.18g204200.1 locus=Glyma.18g204200 ID=Glyma.18g204200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDTKIGSLDAPKPNSNDVVSCNLTSSAAIQPCLPATVINGAGCSDSTLGGHLARRLVEIGVTDVFSVPGDFNLTLLDHLIAEPALHLVGCCNELNAGYAADGYARARGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTSRILHHTIGLPDFSQELRCFQTITCFQAVVNNLEDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFSRDPVRFSLSPRLSNKMGLEAAVEAAAEFLNKAVKPVLVGGPKLRVATASDAFVELADACGYALAVMPSAKGQVPEHHPHFIGTYWGAVSTAFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAIIVQPDRVVIANGPAFGCVLMKDFLKALAKRLKHNNTAYENYHRIFVPDGHPLKAAPREPLRVNVLFQHIQNMLSGETAVIAETGDSWFNCQKLKLPKACGYEFQMQYGSIGWSVGATLGYAQAVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLIDAIHNGEGKCWTAKVFCEEELVEAIATATGPKKDSLCFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ*






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