Report for Sequence Feature Glyma.18g202600
Feature Type: gene_model
Chromosome: Gm18
Start: 48645944
stop: 48649306
Source: JGI
Version: Wm82.a4.v1
High confidence: yes
Annotations for Glyma.18g202600
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G05580.1 AT
FAD8
JGI N/A IEA
1.14.99.33 EC
JGI N/A IEA
GO:0006629 GO-bp
lipid metabolic process
JGI N/A IEA
GO:0055114 GO-bp
obsolete oxidation-reduction process
JGI N/A IEA
GO:0016717 GO-mf
oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water
JGI N/A IEA
K10257 KEGG
Lipid biosynthesis proteins
JGI N/A IEA
PTHR32100 PantherFam
OMEGA-6 FATTY ACID DESATURASE, CHLOROPLASTIC
JGI N/A IEA
PF00487 Pfam
Fatty acid desaturase
JGI N/A IEA
PF11960 Pfam
Domain of unknown function (DUF3474)
JGI N/A IEA
Proteins Associated with Glyma.18g202600
Locus Gene Symbol Protein Name
FAD7-2 omega-3 fatty acid desaturase 7 gene 2
Gene model name correspondences to Glyma.18g202600 Gene Call Version Wm82.a4.v1
Corresponding Name Annotation Version Evidence Comments
Glyma18g43210 Wm82.a1.v1.1 IGC As supplied by JGI
Coding sequences of Glyma.18g202600
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.18g202600.1 sequence-type=CDS polypeptide=Glyma.18g202600.1.p locus=Glyma.18g202600 id=Glyma.18g202600.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGGCAACTTGGATATTATCAGAATGTGGCTTGAAGCCTCTTGCTCCAGTAATTCCTAGACCTAGAACTGGGGCTGCTTTGTCCAGCACCTCAAGGGTTGAATTTTTGGACACAAACAAGGTAGTGGCAGGTCCTAAGTTTCAACCTTTGAGGTGCAACCTCAGGGAGAGGAATTGGGGGCTGAAAGTGAGTGCCCCTTTGAGGGTTGCTTCCATTGAAGAGGAGCAAAAGAGTGTTGATTTAACCAATGGGACTAATGGGGTTGAGCATGAGAAGCTTCCAGAATTTGACCCTGGTGCTCCGCCACCATTCAACTTGGCTGATATTAGAGCAGCCATTCCAAAGCATTGCTGGGTGAAGGACCCTTGGAGGTCCATGAGCTATGTGGTGAGGGATGTGATTGCTGTCTTTGGTTTGGCTGCTGCTGCTGCGTATCTCAATAATTGGTTGGTTTGGCCTCTCTATTGGGCTGCTCAAGGCACTATGTTCTGGGCTCTGTTTGTTCTTGGTCATGATTGTGGTCATGGAAGCTTTTCAAACAACTCCAAATTGAACAGTGTTGTTGGACATCTGCTGCATTCTTCAATTCTAGTGCCATATCATGGATGGAGAATCAGTCATAGGACTCATCACCAACATCATGGTCATGCTGAAAATGATGAATCATGGCATCCGTTGCCTGAAAAATTGTTCAGAAGCTTGGACACTGTAACTCGTATGTTAAGATTCACAGCACCTTTTCCACTTCTTGCATTTCCTGTGTACCTTTTTAGTAGGAGTCCTGGGAAGACTGGTTCTCACTTTGACCCCAGCAGTGACTTGTTCGTTCCCAATGAAAGAAAAGATGTTATTACTTCCACAGCTTGTTGGGCTGCTATGTTGGGATTGCTTGTTGGATTGGGGTTTGTAATGGGTCCAATTCAACTTCTTAAGCTTTATGGTGTTCCCTATGTTATATTCGTTATGTGGTTGGATTTGGTGACTTATTTGCACCATCATGGCCATGAAGACAAATTACCTTGGTACCGTGGAAAGGAATGGAGCTACCTCAGGGGTGGTCTAACTACTCTTGATCGTGATTATGGATGGATCAATAACATTCACCATGACATTGGCACTCATGTCATTCATCACCTATTTCCTCAAATTCCACACTATCACTTAGTTGAGGCTACTGAGGCTGCTAAGCCAGTGTTTGGAAAATATTATAGAGAACCAAAGAAATCAGCAGCACCTCTTCCTTTTCACCTTATTGGGGAAATAATAAGGAGCTTCAAGACTGACCATTTTGTTAGTGACACGGGGGATGTTGTGTACTATCAAACCGACTCTAAGATTAATGGCTCTTCCAAATTAGAGTGA
>Glyma.18g202600.2 sequence-type=CDS polypeptide=Glyma.18g202600.2.p locus=Glyma.18g202600 id=Glyma.18g202600.2.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGGCAACTTGGATATTATCAGAATGTGGCTTGAAGCCTCTTGCTCCAGTAATTCCTAGACCTAGAACTGGGGCTGCTTTGTCCAGCACCTCAAGGGTTGAATTTTTGGACACAAACAAGGTAGTGGCAGGTCCTAAGTTTCAACCTTTGAGGTGCAACCTCAGGGAGAGGAATTGGGGGCTGAAAGTGAGTGCCCCTTTGAGGGTTGCTTCCATTGAAGAGGAGCAAAAGAGTGTTGATTTAACCAATGGGACTAATGGGGTTGAGCATGAGAAGCTTCCAGAATTTGACCCTGGTGCTCCGCCACCATTCAACTTGGCTGATATTAGAGCAGCCATTCCAAAGCATTGCTGGGTGAAGGACCCTTGGAGGTCCATGAGCTATGTGGTGAGGGATGTGATTGCTGTCTTTGGTTTGGCTGCTGCTGCTGCGTATCTCAATAATTGGTTGGTTTGGCCTCTCTATTGGGCTGCTCAAGGCACTATGTTCTGGGCTCTGTTTGTTCTTGGTCATGATTGTGGTCATGGAAGCTTTTCAAACAACTCCAAATTGAACAGTGTTGTTGGACATCTGCTGCATTCTTCAATTCTAGTGCCATATCATGGATGGAGAATCAGTCATAGGACTCATCACCAACATCATGGTCATGCTGAAAATGATGAATCATGGCATCCGTTGCCTGAAAAATTGTTCAGAAGCTTGGACACTGTAACTCGTATGTTAAGATTCACAGCACCTTTTCCACTTCTTGCATTTCCTGTGTACCTTTTTAGTAGGAGTCCTGGGAAGACTGGTTCTCACTTTGACCCCAGCAGTGACTTGTTCGTTCCCAATGAAAGAAAAGATGTTATTACTTCCACAGCTTGTTGGGCTGCTATGTTGGGATTGCTTGTTGGATTGGGGTTTGTAATGGGTCCAATTCAACTTCTTAAGCTTTATGGTGTTCCCTATGTTGTAAGTTTCTTCCTCTTTTCCATCATTTCCATGGTTCTTTTTGAATCAAGAATGAATGAAGTTCTCATTTGA
Predicted protein sequences of Glyma.18g202600
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.18g202600.1.p sequence-type=predicted peptide transcript=Glyma.18g202600.1 locus=Glyma.18g202600 id=Glyma.18g202600.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MATWILSECGLKPLAPVIPRPRTGAALSSTSRVEFLDTNKVVAGPKFQPLRCNLRERNWGLKVSAPLRVASIEEEQKSVDLTNGTNGVEHEKLPEFDPGAPPPFNLADIRAAIPKHCWVKDPWRSMSYVVRDVIAVFGLAAAAAYLNNWLVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNSKLNSVVGHLLHSSILVPYHGWRISHRTHHQHHGHAENDESWHPLPEKLFRSLDTVTRMLRFTAPFPLLAFPVYLFSRSPGKTGSHFDPSSDLFVPNERKDVITSTACWAAMLGLLVGLGFVMGPIQLLKLYGVPYVIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVFGKYYREPKKSAAPLPFHLIGEIIRSFKTDHFVSDTGDVVYYQTDSKINGSSKLE*
>Glyma.18g202600.2.p sequence-type=predicted peptide transcript=Glyma.18g202600.2 locus=Glyma.18g202600 id=Glyma.18g202600.2.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MATWILSECGLKPLAPVIPRPRTGAALSSTSRVEFLDTNKVVAGPKFQPLRCNLRERNWGLKVSAPLRVASIEEEQKSVDLTNGTNGVEHEKLPEFDPGAPPPFNLADIRAAIPKHCWVKDPWRSMSYVVRDVIAVFGLAAAAAYLNNWLVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNSKLNSVVGHLLHSSILVPYHGWRISHRTHHQHHGHAENDESWHPLPEKLFRSLDTVTRMLRFTAPFPLLAFPVYLFSRSPGKTGSHFDPSSDLFVPNERKDVITSTACWAAMLGLLVGLGFVMGPIQLLKLYGVPYVVSFFLFSIISMVLFESRMNEVLI*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
