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Report for Sequence Feature Glyma.18g200000

Feature Type:gene_model
Chromosome:Gm18
Start:47915722
stop:47919506
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g200000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G08980.1AT Peptidase S24/S26A/S26B/S26C family protein JGI N/AIEA
GO:0006465GO-bp signal peptide processing EnsemblGenomesN/AIEA
GO:0006508GO-bp proteolysis EnsemblGenomesN/AIEA
GO:0006627GO-bp protein processing involved in protein targeting to mitochondrion EnsemblGenomesN/AIEA
GO:0033108GO-bp mitochondrial respiratory chain complex assembly EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0042720GO-cc mitochondrial inner membrane peptidase complex EnsemblGenomesN/AIEA
GO:0008236GO-mf serine-type peptidase activity EnsemblGenomesN/AIEA
KOG1568 KOG Mitochondrial inner membrane protease, subunit IMP2 JGI N/AIEA
PTHR12383Panther PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED JGI N/AIEA
PTHR12383:SF8Panther JGI N/AIEA
PF00717PFAM Peptidase S24-like JGI N/AIEA

Expression Patterns of Glyma.18g200000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g200000
ParalogEvidenceComments
Glyma.07g148800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g200000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g42910 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g200000
>Glyma.18g200000.2 sequence-type=transcript locus=Glyma.18g200000 ID=Glyma.18g200000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATTTACCTCAGCATTCCTGAAAACAATTTCTTACAGTTGATGTTTGATATAGAAGTGCACCTAAACACATGGGGACAAGCAGTTTTCTATGGAACTGTACTAAAAAATTCATCACAGCCGGGATCGTCACTGTGACTGTGACTGATCATTTTGTGACAGTTATTCCAGTTCGAGGCGGATCTATGTCTCCCACATTTAATCCTAAAGCTGGTTCTCATATGGGAGATGTTTTTGATGACTATGTTTTGGTTGAGAAATTTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGCTCCCCTCTAAATCACAAGGAGACACACGTAAAGAGAATAGCTGCATTACCTGGTGAATGGTTTGGCACTCATCATAACAATGATGTGATTCAGATTCCATTAGGACATTGTTGGGTTGAAGGAGACAACACCGCTTCTAGCTTGGATTCAAATTCATTTGGACCAATTCCTTTGGCCCTAATTCGGGGAAGGGTTACCCATGTTGTGTGGCCTCCTCAAAGAATAGGAGCTGTCAAGAGTACTCCACCGCAACGATTATCTTCTTTTTAGTTGGATCCACTAGTGGAATAATGCTATATTGTTGGGCTTCCTCAAAGGATAGGTGCGAAAGAACTACATCAGAAGTGTTATCTTCTGATCTCTGACGTTGTTCCCTTACATGTTCCTTGATTTGTCAGTGGAAAGGATAGTTACTTACCTATTTGTTGATTGGGTTGCTAGTGTAAACCTTGAATCCCTCAAATGTTGGTTACATTCTAAGCAAGGTAACCTAAAGGTTACAAATGAGATGAATGATATCTTAAAGCAGAATAGGTGAAAAAACTTGCATAACAATGTTTAGAAGGATGCTGGTCCGAATGTGATACCAGCTTTCTCGAGTAGTTGTCCAGATGTCACGATGATGAGCAGCAATGGTGATTACTAGCATAGATATGAGAAATTAATAAGCTAAATTACTCATGTGGTACTTTATTTTAGGTTATAATTCAATCTCTTTTTGTAAAATGGTTCCTTAAGTAATGGTTTTTACAAC
Coding sequences of Glyma.18g200000
>Glyma.18g200000.1 sequence-type=CDS polypeptide=Glyma.18g200000.1.p locus=Glyma.18g200000 ID=Glyma.18g200000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGACAAGCAGTTTTCTATGGAACTGTACTAAAAAATTCATCACAGCCGGGATCGTCACTGTGACTGTGACTGATCATTTTGTGACAGTTATTCCAGTTCGAGGCGGATCTATGTCTCCCACATTTAATCCTAAAGCTGGTTCTCATATGGGAGATGTTTTTGATGACTATGTTTTGGTTGAGAAATTTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGCTCCCCTCTAAATCACAAGGAGACACACGTAAAGAGAATAGCTGCATTACCTGGTGAATGGTTTGGCACTCATCATAACAATGATGTGATTCAGATTCCATTAGGACATTGTTGGGTTGAAGGAGACAACACCGCTTCTAGCTTGGATTCAAATTCATTTGGACCAATTCCTTTGGCCCTAATTCGGGGAAGGGTTACCCATGTTGTGTGGCCTCCTCAAAGAATAGGAGCTGTCAAGAGTACTCCACCGCAACGATTATCTTCTTTTTAG

>Glyma.18g200000.2 sequence-type=CDS polypeptide=Glyma.18g200000.2.p locus=Glyma.18g200000 ID=Glyma.18g200000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGACAAGCAGTTTTCTATGGAACTGTACTAAAAAATTCATCACAGCCGGGATCGTCACTGTGACTGTGACTGATCATTTTGTGACAGTTATTCCAGTTCGAGGCGGATCTATGTCTCCCACATTTAATCCTAAAGCTGGTTCTCATATGGGAGATGTTTTTGATGACTATGTTTTGGTTGAGAAATTTTGCCTTAGGAATTACAAGTTTTCACATGGCGATGTGGTGGTCTTTCGCTCCCCTCTAAATCACAAGGAGACACACGTAAAGAGAATAGCTGCATTACCTGGTGAATGGTTTGGCACTCATCATAACAATGATGTGATTCAGATTCCATTAGGACATTGTTGGGTTGAAGGAGACAACACCGCTTCTAGCTTGGATTCAAATTCATTTGGACCAATTCCTTTGGCCCTAATTCGGGGAAGGGTTACCCATGTTGTGTGGCCTCCTCAAAGAATAGGAGCTGTCAAGAGTACTCCACCGCAACGATTATCTTCTTTTTAG
Predicted protein sequences of Glyma.18g200000
>Glyma.18g200000.1.p sequence-type=predicted peptide transcript=Glyma.18g200000.1 locus=Glyma.18g200000 ID=Glyma.18g200000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGTSSFLWNCTKKFITAGIVTVTVTDHFVTVIPVRGGSMSPTFNPKAGSHMGDVFDDYVLVEKFCLRNYKFSHGDVVVFRSPLNHKETHVKRIAALPGEWFGTHHNNDVIQIPLGHCWVEGDNTASSLDSNSFGPIPLALIRGRVTHVVWPPQRIGAVKSTPPQRLSSF*

>Glyma.18g200000.2.p sequence-type=predicted peptide transcript=Glyma.18g200000.2 locus=Glyma.18g200000 ID=Glyma.18g200000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGTSSFLWNCTKKFITAGIVTVTVTDHFVTVIPVRGGSMSPTFNPKAGSHMGDVFDDYVLVEKFCLRNYKFSHGDVVVFRSPLNHKETHVKRIAALPGEWFGTHHNNDVIQIPLGHCWVEGDNTASSLDSNSFGPIPLALIRGRVTHVVWPPQRIGAVKSTPPQRLSSF*






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