SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.18g193800

Feature Type:gene_model
Chromosome:Gm18
Start:46693001
stop:46696315
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g193800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G49290.1AT receptor like protein 56 JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG0472 KOG Leucine-rich repeat protein JGI N/AIEA
PTHR24420Panther LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE JGI N/AIEA
PTHR24420:SF473Panther JGI N/AIEA
PF00560PFAM Leucine Rich Repeat JGI N/AIEA

Expression Patterns of Glyma.18g193800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18g193800 not represented in the dataset
Glyma.18g193800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g193800
ParalogEvidenceComments
Glyma.07g142900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g193800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g41961 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g193800
>Glyma.18g193800.1 sequence-type=CDS polypeptide=Glyma.18g193800.1.p locus=Glyma.18g193800 ID=Glyma.18g193800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGTAGGTCTGAACTAAGGGCATTGGAGAACCTTGACTTGACTGCCAACATGTTGAACGACAGTATCTTACGGGCTCAACATCTCCAATCTCTTAATTTAAGCAGCAACCTATTGGAAGGATCATTCAATATTAGTGTTGGATTTTCTGGTAATAATTTTGCTGGTAATATTGGATCTAACCTTGCAAGTCTTACATCCCTTGATTATCTTGGTTTTGAAAGAAACCAGTTTGAAGTCCCTATTTCATTCGCACCATTTTCCAATCATTCAAACCTTAAGTTCATATCCAATGGGAATAAATTGCAAGTGCTCAGTTTGTCTTCAAGGGTCGAAACCAATTCTCTCCCCCTTCCAATCTTTCTTCATTACCATTACAATTTGACTTATTTGGATTTCACTGGTTGTAAACTAGGAGGAGAGTTTCCAAAATGGTTATTAGAAAACAACACAAAAATGACAAACCTTGTTCTGAAAAATTGTTCCTTTACTGGGTTAATCCAGCTGCCATCCCGTCCCCTACTCAAGCTGAAAAGAATTGATGTATCTGATAATGCAATAACAGGTCAAATCCTGAGTAACAATATTAATTCAATTTTTCCAAATTTGAAAATTTTAGATATGTCTATAAATGCAATCCATGGTTCAGTTCTTGGCGAGTTTGGCCAAATGAACTTGCTGCAAACATTGGATCTCTCAAATAATCATTTGTCGAGAGAAATTCCACATGAGCTAAGCAACATGAGCTCATTACATACATTGGATCTCTCAAATAATCAATTGTGTGGAGAAATACCTGAAGGCATATTTGGAGTTCTGTACCAATCCAGAGGTAAGGTTTCATCCTTGTTACTGAATGATAATAGATTTACTGGTAGACTCCCAAGCAGCATTTTTAGTCCATGCATCACTTCATTGGATAAAAGCGATAATCATTTGGTGGGAAAGATTCCAAGCCTTATAAAAAACATGTCAGGTTTGCAAGAGCTTCATATGTCCAATAATCATTTTGAAGGATCTATTCCATTAGAATTGACCGAACTTGAAAATATACTTTATCTAGATCTCTCCCAAAATAATTTGATTGGTGTTGTTCCATCTTTTATAAATTCTTCGGGGAGCATTATCCATTTGAGAGGATTATCCAAAAGAATGATCAATGGAAGCTATTCCGCAGTGATGCTACTAGACCTTAGCTTCAACGAAATAATCGATGGCCTTGAAGATTTGATACAGGAACATACAAGGCTGAACATTCTCCTTTTGAAAGGCAATCACTTTACTGGGGATATACCAAAGCAAGCCAACACTTACACGGGGAGAATCCTTGCTTACATGACTGGAATTGACTTGTCCTGCAATAAACTTAAGGGGAATATCCCATTTCAGCTTGGAAACTTGACAAGAATTCAATCATTAAACTTGTCACATAATGATTTGACAGGGCGGATTCCGACTACATTCTCCAATTTGGTTCAAATAGAGAGTTTGGATCTTTCATTTAACAAGTTGAGTGGCCAAATTCTTCCTCAACTGAGTGAGTTAACCTCCCTTGCTGTATTCAATGTGGTGCACAATAACTTATCTGGTGCAACACCTAAAAGTAAAGAGCGATTTTCGACATTTGAAGAAAGCAGCTACAAGGGTAATCAGTTCCTTTGTGGACCTCTACTACCAAAAAGTTGCAATCCCCTACCTGTTATTTTACCAAATGATGAAGACAGTGATAGTTTGTTGGACATGTTTGTTTTCTATGTGAGCTTTGTCGTGTCATACACATCAACTTTATTGGTAACTGCAGCAGCTTTATATATTAATCCTTACTGGAGGCAAGCATGGTTTTACTACATAGAATTGATGAGCCTGAATTGCTACTACTTTATCAAGGACAAATTGTACTCAAGCGTTGAGTCATTTTTCAGGCACCTTCCCGCCATATATAAACCATCATCGCCCAGGTAA
Predicted protein sequences of Glyma.18g193800
>Glyma.18g193800.1.p sequence-type=predicted peptide transcript=Glyma.18g193800.1 locus=Glyma.18g193800 ID=Glyma.18g193800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MCRSELRALENLDLTANMLNDSILRAQHLQSLNLSSNLLEGSFNISVGFSGNNFAGNIGSNLASLTSLDYLGFERNQFEVPISFAPFSNHSNLKFISNGNKLQVLSLSSRVETNSLPLPIFLHYHYNLTYLDFTGCKLGGEFPKWLLENNTKMTNLVLKNCSFTGLIQLPSRPLLKLKRIDVSDNAITGQILSNNINSIFPNLKILDMSINAIHGSVLGEFGQMNLLQTLDLSNNHLSREIPHELSNMSSLHTLDLSNNQLCGEIPEGIFGVLYQSRGKVSSLLLNDNRFTGRLPSSIFSPCITSLDKSDNHLVGKIPSLIKNMSGLQELHMSNNHFEGSIPLELTELENILYLDLSQNNLIGVVPSFINSSGSIIHLRGLSKRMINGSYSAVMLLDLSFNEIIDGLEDLIQEHTRLNILLLKGNHFTGDIPKQANTYTGRILAYMTGIDLSCNKLKGNIPFQLGNLTRIQSLNLSHNDLTGRIPTTFSNLVQIESLDLSFNKLSGQILPQLSELTSLAVFNVVHNNLSGATPKSKERFSTFEESSYKGNQFLCGPLLPKSCNPLPVILPNDEDSDSLLDMFVFYVSFVVSYTSTLLVTAAALYINPYWRQAWFYYIELMSLNCYYFIKDKLYSSVESFFRHLPAIYKPSSPR*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo