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Report for Sequence Feature Glyma.18g192600

Feature Type:gene_model
Chromosome:Gm18
Start:46461597
stop:46462033
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g192600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G69410.1AT eukaryotic elongation factor 5A-3 JGI N/AIEA
GO:0006452GO-bp translational frameshifting EnsemblGenomesN/AIEA
GO:0006452GO-bp translational frameshifting JGI N/AIEA
GO:0045901GO-bp positive regulation of translational elongation EnsemblGenomesN/AIEA
GO:0045901GO-bp positive regulation of translational elongation JGI N/AIEA
GO:0045905GO-bp positive regulation of translational termination EnsemblGenomesN/AIEA
GO:0045905GO-bp positive regulation of translational termination JGI N/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding JGI N/AIEA
GO:0003746GO-mf translation elongation factor activity EnsemblGenomesN/AIEA
GO:0003746GO-mf translation elongation factor activity JGI N/AIEA
GO:0043022GO-mf ribosome binding EnsemblGenomesN/AIEA
GO:0043022GO-mf ribosome binding JGI N/AIEA
PTHR11673Panther TRANSLATION INITIATION FACTOR 5A-RELATED JGI N/AIEA
PF01287PFAM Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold JGI N/AIEA

Expression Patterns of Glyma.18g192600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.18g192600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g41800 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g192600
>Glyma.18g192600.1 sequence-type=CDS polypeptide=Glyma.18g192600.1.p locus=Glyma.18g192600 ID=Glyma.18g192600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACACACCACAATTACCAGCTCATTGATATTGCTGAGGATGGATTTTTGAGTCTGCTTACTAAAAATGGGAACACCAAGGATGACCTCAAGCTTCCCACTGATGAGAGTCTGCTCACTCAGATAAAGGATGGGTTTGTTGAGGGCAAGGATCTTGTTGTGTCTGTCATGTCTGCTATTGGTGAGGAACAAACTTGCGCTCTGAAGGATATTGGGCCTAAGAACTAG
Predicted protein sequences of Glyma.18g192600
>Glyma.18g192600.1.p sequence-type=predicted peptide transcript=Glyma.18g192600.1 locus=Glyma.18g192600 ID=Glyma.18g192600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
THHNYQLIDIAEDGFLSLLTKNGNTKDDLKLPTDESLLTQIKDGFVEGKDLVVSVMSAIGEEQTCALKDIGPKN*






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