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Report for Sequence Feature Glyma.18g188400

Feature Type:gene_model
Chromosome:Gm18
Start:45328408
stop:45328740
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g188400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G17380.1AT Thiamine pyrophosphate dependent pyruvate decarboxylase family protein JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity JGI N/AIEA
GO:0030976GO-mf thiamine pyrophosphate binding EnsemblGenomesN/AIEA
GO:0030976GO-mf thiamine pyrophosphate binding JGI N/AIEA
PTHR18968Panther THIAMINE PYROPHOSPHATE ENZYMES JGI N/AIEA
PTHR18968:SF63Panther JGI N/AIEA
PF02775PFAM Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JGI N/AIEA
GN7V-66790SoyCyc9-rxn oxalyl-CoA decarboxylase Plant Metabolic Network ISS

Expression Patterns of Glyma.18g188400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18g188400 not represented in the dataset
Glyma.18g188400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.18g188400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g40825 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g188400
>Glyma.18g188400.1 sequence-type=CDS polypeptide=Glyma.18g188400.1.p locus=Glyma.18g188400 ID=Glyma.18g188400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
CATGTTTGTGACACTTCATCTTTTATCCAGACGTTAGTTCGGTACCAGCTGCCTGTGGTCATCATTGTTTTCAACAATGGTGGTGTCCGTAGACACCCAGAGGAGATAGATGGACCTCACAAAGATGATCCTGGCCCCACAGATTTTGTCCCAAATGCAGGGTACCATGCTTTGATACAAGCTTTTGGTGGAAAGGGCTATCTTGTTGGGACGCGTGATGAACTCAAGTCCGCCTTTTCAGAATCCTTCTCTGCTAGGAAACCAGCTGTAGTAAATATTGTGATCGATCCCTATGCTGGTTCAGAGAGTGGGAGGATGCAACATAAGAATTGA
Predicted protein sequences of Glyma.18g188400
>Glyma.18g188400.1.p sequence-type=predicted peptide transcript=Glyma.18g188400.1 locus=Glyma.18g188400 ID=Glyma.18g188400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
HVCDTSSFIQTLVRYQLPVVIIVFNNGGVRRHPEEIDGPHKDDPGPTDFVPNAGYHALIQAFGGKGYLVGTRDELKSAFSESFSARKPAVVNIVIDPYAGSESGRMQHKN*






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