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Report for Sequence Feature Glyma.18g175500

Feature Type:gene_model
Chromosome:Gm18
Start:41733553
stop:41737785
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g175500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G47700.1AT RINT-1 / TIP-1 family JGI N/AIEA
GO:0048193GO-bp Golgi vesicle transport EnsemblGenomesN/AIEA
GO:0005783GO-cc endoplasmic reticulum EnsemblGenomesN/AIEA
KOG2218 KOG ER to golgi transport protein/RAD50-interacting protein 1 JGI N/AIEA
PTHR13520Panther RAD50-INTERACTING PROTEIN 1 (PROTEIN RINT-1) JGI N/AIEA
PF04437PFAM RINT-1 / TIP-1 family JGI N/AIEA

Expression Patterns of Glyma.18g175500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g175500
ParalogEvidenceComments
Glyma.08g357000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g175500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g25590 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g175500
>Glyma.18g175500.1 sequence-type=CDS polypeptide=Glyma.18g175500.1.p locus=Glyma.18g175500 ID=Glyma.18g175500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGTGGCTCCAAACACTGCCTCCATCCTCTCACATCTCGCCCTCCGCACTCTCCTTCCTCGACCACAGGCTCCACACGCAGCTCGCCGTTGCCGAGGCTCCCACCTTCGCCGCCGAGCTCCAGACTCAGTGCTCCGAGTTGGATCGCTCGCTCGACGAGTTGACTCGGAGGCTCGGAGCTGGTCTCTCCGCCTACGCCTCCTTCTCCGGCGAAATCCACGGCCTCTTCGGGGCCGTTACTGATAGGCTGGTCGCTCTCTCCTCCACCGTCGTGCCAGATGGAGGAAGAGGCGAAGGGGATGGCAAGGGTTTCAGAGAGGAACTTGCGACTTTGGCCAAGGAAGTGGCTAGGTTGGAGACGGTTCGTGTTTATGCAGAGAAAGCACTGAAACTTGATACTTTGGTTGGTGATATTGAGGATGCTGTATCATTTACCATGAGCAAGAACATAAGGAAACATTCTAGTCAAAATTCACAAGAAATGCATATGCTTGCTATTAAAACACTGAAAACAACAGAAGACATATTAACTTCAATTACAAAAGCACATCCTCAGTGGAAGCATCTTGTATCAGCTGTTGATCACAGAGTAGACCGAGCTCTTGCTATTTTGAGGCCCCAGGCAATTGCTGAGCATCGGGCACTTCTTACTTCACTTGGATGGCCCCCACCTCTTTCTGCCTTAACCTCCTCTAACTCAGATGCAAGTACTGCAAATCAAGTTGTGAATCCTCTACTGAGCATGCATGTGGATCTTAAAGTCCAGTACTCTGAAAACTTTCTTGCTTTGTGCAACCTACAGGAGTTGCAAAGGCAAAGGAAAGCTAGGCAACTTGAGGGCCATGACAGGGAAGTTGCTCTACGACAACCACTTTGGGTAATAGAAGAGCTTGTCAATCCCTTATCATTGGCTTCCCAACGACATTTCTCAAAATGGGTTGATAAACCAGAATTTATTTTTACTCTTGTATATAAAATCACAAGGGACTATGTTGACTCTATGGATGAATTGTTGCAGCCATTAGTTGATGAAGCAAAGTTGCTTGGTTATAGTTGTAGAGAAGAATGGATCTCAGCAATGGTAACCTCCTTAACCACATACTTGGCGAAAGAAATTTTCCCTAGTTACATTAGTCAACTAGATGGAGAGAGTGTTACAGGAATTCAGTCATCTGCTAGAATATCATGGCTACATCTCATTGATTTGATGATAGCTTTTGATAAAAGGATTAAGTCTTTGGTAGAGCATTCTGGGATCTTGCTATCCTTTGATGACGATATCATGCAGAAAATTTCTTCTCTATCTGTATTTTGTGATCGTCCAGATTGGCTTGATCTATGGGCTGAAATTGAGCTAGGTGATGTCCTAGATAAGTTGAAACCAGACATCCAAGATGAGAATAATTGGAGAAAGAAAGTTGAAGGTGTGGTTCTTTCATCCTATACTGATGATCACAAGTCCCCTCTGGTTTCTAATGCCTTTCTTCGCCATCTAGCATCTGTTATTGATCGTTGCCGATCATTGCCTAGTGTAAGTTTGAGGTCAAAATTTCTCAGATTAGCAGGTATTCCTATTATAAGAAATTTTTTTGATTCCATACTTATCCGCTGCCAAGAAGCTGAAGGTTTGACTGCCTTAACTGATGATGATGCTGTAATTAAAGTTACAATTTCTGTCAATGCTGCTCATTACTTTGAATCTGTTCTAAAGGAATGGTCTGAGGATGTCTTTTTCCTTGAGATGGGAATGGATGAGGATGATAAAACAGAATTGGAAAGTAATTCAAATAGTTATGGTGAAGTGTTGCCAGAGAGTTCCAGAAGGGTTATCTTTGATGATGAGATAAAAAAGTTGGAAGAGTTCAGAACAGAGTGGGTTGAAAAGATTTCCCTAGTTATTTTGAGAGGTTTTGATTCTCATTCTCGAGATTATGTGAAGAACAAAAGGCAATGGCAAAAGGGTGAAGAAGGATGGGCCGTGTCAAAGACTTTAATACAAGCCCTGGATTATCTTCAGAGTAAAATGTCAGTGGTAGAAGTAAGTTTGAATGGTAGGGATTTTATTGGGGTTTGGAGAAGTTTGGCAGCAGGAATTGATCAATTGATTTTTAATGGTATCCTCATAAGCAATGTAAAATTTCACAATAGTGGTGTTGAAAGATTTGGTAGCGACTTGGATGTTTTATTTGGGGTATTTGGAGCATGGTGTTTGCGACCTGAAGGTTTTTTCCCAAAATCAAGTGAAGGTCTGAAGTTGTTGAAGATGGATGAAAATAGACTGCAAGAATGTATGGGAGGGGGGAAGAGATGGTTGAAGGAGAATGGGCTCAGGCGTTTGAGTGTAACTGAAGCAGAAAAGATTTTGAAGAGCAGGGTGTTCACAAGTTGA
Predicted protein sequences of Glyma.18g175500
>Glyma.18g175500.1.p sequence-type=predicted peptide transcript=Glyma.18g175500.1 locus=Glyma.18g175500 ID=Glyma.18g175500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEWLQTLPPSSHISPSALSFLDHRLHTQLAVAEAPTFAAELQTQCSELDRSLDELTRRLGAGLSAYASFSGEIHGLFGAVTDRLVALSSTVVPDGGRGEGDGKGFREELATLAKEVARLETVRVYAEKALKLDTLVGDIEDAVSFTMSKNIRKHSSQNSQEMHMLAIKTLKTTEDILTSITKAHPQWKHLVSAVDHRVDRALAILRPQAIAEHRALLTSLGWPPPLSALTSSNSDASTANQVVNPLLSMHVDLKVQYSENFLALCNLQELQRQRKARQLEGHDREVALRQPLWVIEELVNPLSLASQRHFSKWVDKPEFIFTLVYKITRDYVDSMDELLQPLVDEAKLLGYSCREEWISAMVTSLTTYLAKEIFPSYISQLDGESVTGIQSSARISWLHLIDLMIAFDKRIKSLVEHSGILLSFDDDIMQKISSLSVFCDRPDWLDLWAEIELGDVLDKLKPDIQDENNWRKKVEGVVLSSYTDDHKSPLVSNAFLRHLASVIDRCRSLPSVSLRSKFLRLAGIPIIRNFFDSILIRCQEAEGLTALTDDDAVIKVTISVNAAHYFESVLKEWSEDVFFLEMGMDEDDKTELESNSNSYGEVLPESSRRVIFDDEIKKLEEFRTEWVEKISLVILRGFDSHSRDYVKNKRQWQKGEEGWAVSKTLIQALDYLQSKMSVVEVSLNGRDFIGVWRSLAAGIDQLIFNGILISNVKFHNSGVERFGSDLDVLFGVFGAWCLRPEGFFPKSSEGLKLLKMDENRLQECMGGGKRWLKENGLRRLSVTEAEKILKSRVFTS*






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