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Report for Sequence Feature Glyma.18g172500

Feature Type:gene_model
Chromosome:Gm18
Start:40863962
stop:40869831
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g172500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G48840.1AT homolog of bacterial PANC JGI N/AIEA
GO:0015940GO-bp pantothenate biosynthetic process EnsemblGenomesN/AIEA
GO:0015940GO-bp pantothenate biosynthetic process JGI N/AIEA
GO:0033317GO-bp pantothenate biosynthetic process from valine EnsemblGenomesN/AIEA
GO:0004592GO-mf pantoate-beta-alanine ligase activity EnsemblGenomesN/AIEA
GO:0004592GO-mf pantoate-beta-alanine ligase activity JGI N/AIEA
KOG3042 KOG Panthothenate synthetase JGI N/AIEA
PTHR21299Panther CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGASE JGI N/AIEA
PTHR21299:SF1Panther PANTOATE--BETA-ALANINE LIGASE JGI N/AIEA
PF02569PFAM Pantoate-beta-alanine ligase JGI N/AIEA
PANTO-PWYSoyCyc9 phosphopantothenate biosynthesis I Plant Metabolic Network ISS
GN7V-42423SoyCyc9-rxn pantoate-β-alanine ligase Plant Metabolic Network ISS

Expression Patterns of Glyma.18g172500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18g172500 not represented in the dataset
Glyma.18g172500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g172500
ParalogEvidenceComments
Glyma.08g355700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g172500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g38038 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g172500
>Glyma.18g172500.1 sequence-type=CDS polypeptide=Glyma.18g172500.1.p locus=Glyma.18g172500 ID=Glyma.18g172500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTCCAGCCCCAAGGGTGATCTCCGACAAGGCCTCGATGCGGAGCTGGTCGCGCTCGATGCGGGCCCAGGGCAAGCTCATTGGGCTGGTCCCCACCATGGGCTTCCTCCACGCGGGCCACCTCTCGCTCGTGGCCCAGGCCCGCCAACTCTCCGACGTCGTCGCCGTCTCCATCTACGTCAACCCGGGCCAATTCGCCCCCACGGAGGACCTCTCCACCTACCCCTCCGACTTCGACGGCGACGTAAAGAAACTCGCGTCCGTTCCCGGCGGCGTCGACGTCGTTTTCCATCCCCGTAACTTGTACGATTACGGGAAGAACGGTGGTGGTGACGTGGCAGAGGCTGGTGGAATGGTGTCGTGCGTTGAGAGTGGGTCCGGGCACGAAAGTTGGGTGAGGGTTGAGAAGCTGGAATTGGGGCTGTGTGGGAAGAGCAGGCCCGTTTTCTTCAGAGGGGTGGCGACTGTGGTGACGAAGTTGTTTAATATTGTGGAGCCAGATGTGGCTGTGTTCGGTAAGAAGGATTATCAGCAGTGGCGGCTTATTCAGAGGATGGTTCGAGATCTTGATTTTTCCATAAAAGTGATAGGTGCTGAAATAACACGTGATAATGATGGCCTGGCAATGAGTTCACGTAATGTGCACCTTTCACCTGAAGAGAGGGAAAAGGCACTATCAATAAATAAATCATTGTTAAGAGCTAAATCAGCAGCAGGAGATGGTCAGGTGCATTGTGAGAAGTTGACAAATTTGGTCATCCAAAGTGTTACTGATGCTGGTGGAAGGATCGATTATGCTGAGATTGTTGATCAAAATAATTTGGAGAAAGTGGAACAGATCAAGAGTCCTGTCGTCTTCTGTGTTGCTGCATGGTTTGGCAAAGTCAGGCTTATAGACAACATGGAAATCAACTTGTCAATGAATGTTTGA
Predicted protein sequences of Glyma.18g172500
>Glyma.18g172500.1.p sequence-type=predicted peptide transcript=Glyma.18g172500.1 locus=Glyma.18g172500 ID=Glyma.18g172500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAPAPRVISDKASMRSWSRSMRAQGKLIGLVPTMGFLHAGHLSLVAQARQLSDVVAVSIYVNPGQFAPTEDLSTYPSDFDGDVKKLASVPGGVDVVFHPRNLYDYGKNGGGDVAEAGGMVSCVESGSGHESWVRVEKLELGLCGKSRPVFFRGVATVVTKLFNIVEPDVAVFGKKDYQQWRLIQRMVRDLDFSIKVIGAEITRDNDGLAMSSRNVHLSPEEREKALSINKSLLRAKSAAGDGQVHCEKLTNLVIQSVTDAGGRIDYAEIVDQNNLEKVEQIKSPVVFCVAAWFGKVRLIDNMEINLSMNV*






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