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Report for Sequence Feature Glyma.18g172100

Feature Type:gene_model
Chromosome:Gm18
Start:40781648
stop:40787005
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g172100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G32670.1AT vesicle-associated membrane protein 725 JGI N/AIEA
GO:0006887GO-bp exocytosis EnsemblGenomesN/AIEA
GO:0006906GO-bp vesicle fusion EnsemblGenomesN/AIEA
GO:0016192GO-bp vesicle-mediated transport EnsemblGenomesN/AIEA
GO:0016192GO-bp vesicle-mediated transport JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
GO:0031201GO-cc SNARE complex EnsemblGenomesN/AIEA
GO:0000149GO-mf SNARE binding EnsemblGenomesN/AIEA
GO:0005484GO-mf SNAP receptor activity EnsemblGenomesN/AIEA
KOG0859 KOG Synaptobrevin/VAMP-like protein JGI N/AIEA
PTHR21136Panther SNARE PROTEINS JGI N/AIEA
PTHR21136:SF46Panther JGI N/AIEA
PF00957PFAM Synaptobrevin JGI N/AIEA

Expression Patterns of Glyma.18g172100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.18g172100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g37970 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g172100
>Glyma.18g172100.2 sequence-type=transcript locus=Glyma.18g172100 ID=Glyma.18g172100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
attcCAGAATGGAAGGAAAGAGTCTTATAGTGCCTCCTCCTCTTTGACTTCATCCCTATCTTCCGAATTTTCCTAGTTTTGAAAAATCCTACACACGCTTTTGCTTCCACCTCCTTTCCTCACCTTAAATTAAATTATTGTTCAACAATCAATATCAATATAATTCAATTCCTTCAAATTCCAGATACCAAAAACATATATTCTTTCTCTTTGTTTTCTTGTCTGTGGTATTGTCTCTGAGTTGTTAATTTTGTTTTCTTTCCTTTCTCATGGGGCAGCAATCGTTGATTTACAGCTTCGTGGCGCGCGGCACGATGATCCTGGCGGAGCACACTGATTTCAGTGGAAACTTTGCGGAGGTGGCTTTGCAGTGCCTGCAGAGGCTCCCAGCCTCCGACAACAAATTCACCTACAACGCCGATGGCCACACCTTCAACTACCTCACCTATAATGGATTCACTTACTGTGTTGTGGCAGTAGAGTCTGTTGGTCGCCAACTTGCAATGGCCTATCTTGAACGCATCATGGAGGATTTTTCCAAGAGATATGGTGGAGGAAAAGCTACAACAGCCACTGCTAAAAGCTTAAACAAAGAATTTGGATCCAAGTTGAAGGAACATATGCAGTATTGTGTGGAACACCCAGAAGAGGTTAGCAAACTTGCAAAAGTGAAAGCTCAGGTTTCAGAAGTCCAACAAGTTATGAGGGCAAACATTGATCAGGTTCTTGATCGTCAAGTGAAGATTGACGTTTTAGTGGGTCAAACTGAGGACCTTCGCAATCAGGCGGGGGTTTTCAGGGAGCGGGGAGACCAGATAAGGAGAAAGATGTGGTATCAAAACATGAAGATAAAGTTAATAGTACTTGCCATCGTGATTGCCATCATTTTAATAATTGTCTTATTGGTCACCTAGAATTGTTACAACTCGACCCCTTTTTTGTAATTTAATAAATATAGTTGTATAATATAAACATTATAAATTTGTTTATTTGATTGACATCACAAcactacaaagaaaaatattttctatggttaatttttacattttatgttggttattaatcgtcgtcgaaatcaacaatatagaatgtttgtactttc
Coding sequences of Glyma.18g172100
>Glyma.18g172100.1 sequence-type=CDS polypeptide=Glyma.18g172100.1.p locus=Glyma.18g172100 ID=Glyma.18g172100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGCAGCAATCGTTGATTTACAGCTTCGTGGCGCGCGGCACGATGATCCTGGCGGAGCACACTGATTTCAGTGGAAACTTTGCGGAGGTGGCTTTGCAGTGCCTGCAGAGGCTCCCAGCCTCCGACAACAAATTCACCTACAACGCCGATGGCCACACCTTCAACTACCTCACCTATAATGGATTCACTTACTGTGTTGTGGCAGTAGAGTCTGTTGGTCGCCAACTTGCAATGGCCTATCTTGAACGCATCATGGAGGATTTTTCCAAGAGATATGGTGGAGGAAAAGCTACAACAGCCACTGCTAAAAGCTTAAACAAAGAATTTGGATCCAAGTTGAAGGAACATATGCAGTATTGTGTGGAACACCCAGAAGAGGTTAGCAAACTTGCAAAAGTGAAAGCTCAGGTTTCAGAAGTCCAACAAGTTATGAGGGCAAACATTGATCAGGTTCTTGATCGTCAAGTGAAGATTGACGTTTTAGTGGGTCAAACTGAGGACCTTCGCAATCAGGGAGCGGGGAGACCAGATAAGGAGAAAGATGTGGTATCAAAACATGAAGATAAAGTTAATAGTACTTGCCATCGTGATTGCCATCATTTTAATAATTGTCTTATTGGTCACCTAGAATTGTTACAACTCGACCCCTTTTTTGTAATTTAA

>Glyma.18g172100.2 sequence-type=CDS polypeptide=Glyma.18g172100.2.p locus=Glyma.18g172100 ID=Glyma.18g172100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGCAGCAATCGTTGATTTACAGCTTCGTGGCGCGCGGCACGATGATCCTGGCGGAGCACACTGATTTCAGTGGAAACTTTGCGGAGGTGGCTTTGCAGTGCCTGCAGAGGCTCCCAGCCTCCGACAACAAATTCACCTACAACGCCGATGGCCACACCTTCAACTACCTCACCTATAATGGATTCACTTACTGTGTTGTGGCAGTAGAGTCTGTTGGTCGCCAACTTGCAATGGCCTATCTTGAACGCATCATGGAGGATTTTTCCAAGAGATATGGTGGAGGAAAAGCTACAACAGCCACTGCTAAAAGCTTAAACAAAGAATTTGGATCCAAGTTGAAGGAACATATGCAGTATTGTGTGGAACACCCAGAAGAGGTTAGCAAACTTGCAAAAGTGAAAGCTCAGGTTTCAGAAGTCCAACAAGTTATGAGGGCAAACATTGATCAGGTTCTTGATCGTCAAGTGAAGATTGACGTTTTAGTGGGTCAAACTGAGGACCTTCGCAATCAGGCGGGGGTTTTCAGGGAGCGGGGAGACCAGATAAGGAGAAAGATGTGGTATCAAAACATGAAGATAAAGTTAATAGTACTTGCCATCGTGATTGCCATCATTTTAATAATTGTCTTATTGGTCACCTAG
Predicted protein sequences of Glyma.18g172100
>Glyma.18g172100.1.p sequence-type=predicted peptide transcript=Glyma.18g172100.1 locus=Glyma.18g172100 ID=Glyma.18g172100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGQQSLIYSFVARGTMILAEHTDFSGNFAEVALQCLQRLPASDNKFTYNADGHTFNYLTYNGFTYCVVAVESVGRQLAMAYLERIMEDFSKRYGGGKATTATAKSLNKEFGSKLKEHMQYCVEHPEEVSKLAKVKAQVSEVQQVMRANIDQVLDRQVKIDVLVGQTEDLRNQGAGRPDKEKDVVSKHEDKVNSTCHRDCHHFNNCLIGHLELLQLDPFFVI*

>Glyma.18g172100.2.p sequence-type=predicted peptide transcript=Glyma.18g172100.2 locus=Glyma.18g172100 ID=Glyma.18g172100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGQQSLIYSFVARGTMILAEHTDFSGNFAEVALQCLQRLPASDNKFTYNADGHTFNYLTYNGFTYCVVAVESVGRQLAMAYLERIMEDFSKRYGGGKATTATAKSLNKEFGSKLKEHMQYCVEHPEEVSKLAKVKAQVSEVQQVMRANIDQVLDRQVKIDVLVGQTEDLRNQAGVFRERGDQIRRKMWYQNMKIKLIVLAIVIAIILIIVLLVT*






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