Glyma.18g171400

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Report for Sequence Feature Glyma.18g171400

Feature Type:	gene_model
Chromosome:	Gm18
Start:	40374838
stop:	40382034
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.18g171400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G24800.1	AT	proteolysis 1	JGI	N/A	IEA
GO:0016567	GO-bp	protein ubiquitination	EnsemblGenomes	N/A	IEA
GO:0043161	GO-bp	proteasome-mediated ubiquitin-dependent protein catabolic process	EnsemblGenomes	N/A	IEA
GO:0008270	GO-mf	zinc ion binding	EnsemblGenomes	N/A	IEA
GO:0008270	GO-mf	zinc ion binding	JGI	N/A	IEA
GO:0046872	GO-mf	metal ion binding	EnsemblGenomes	N/A	IEA
GO:0061630	GO-mf	ubiquitin protein ligase activity	EnsemblGenomes	N/A	IEA
PTHR15898	Panther	UNCHARACTERIZED	JGI	N/A	IEA
PTHR15898:SF1	Panther	BIFUNCTIONAL APOPTOSIS REGULATOR	JGI	N/A	IEA
PF00569	PFAM	Zinc finger, ZZ type	JGI	N/A	IEA

Expression Patterns of Glyma.18g171400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18g171400 not represented in the dataset	Glyma.18g171400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.18g171400

Paralog	Evidence	Comments
Glyma.08g354400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g171400 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma18g36930	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.18g171400

Limit To All Plant Sequences

>Glyma.18g171400.2 sequence-type=transcript locus=Glyma.18g171400 ID=Glyma.18g171400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATCTTGATTCTCCCCTGTTGCACCACCGCTTTCTTTCTCTCTCGCCCTCTCTCTGCGTTGTTGGAGAACATTCAGAAAAAAAAAGGAGAGTGAGCCGAAAAAAACAATTCAGAAAATGGAGAACAACGCATTCAGAGATCGAATCTTGGAGGACAATGAACACGAAGAAATCCCTGATTCCTTTGTTTGCTGCGTTTGTCTGGATCTATTATACAAGCCCATTGTGCTATCTTGTGGTCACATATGCTGTTTCTGGTGTGTCTATAATTCAATGAATTGTCTGCGGGAGTCTCAATGTCCAGTATGTAGGAATCAATATTATCACTTCCCAACAGTCTGCCAATTGCTTCACTTTTTACTTCTCAAGATCTATACCGCTGCTTACAAGAGAAGGGAAAACCAAACTCTTGAGGAAGAAAAGCAATCAGGATTCTACTCCCCTCAATTTGATCCTGATACATGTGAATCACAAGCTAAATTTGGTCATTCTGGTATCCCTAGTTCCTCCTCTAATTTGAATTTAACGTCCAACTCATGCAATGTGGGAACTTCTGAATGTCTGGAGCAATCAGGGTCAGCTGCCAATGAAGGAGATGATGGCACCATCTATTATGATGGAGAGTCTGATATTATTGGAACTCCTGCTAAAGGAAAAAAAATGCCTCAGGAAGAGCTTTCTGTACAAAGGAAATTATCAGTTGCAGATGTGACTTGTACGATGTGCAAGCAACTGCTCTTTCATCCTGTAGTTCTTAATTGTGGTCATGTGTACTGTCAAACTTGTGTCATCAACATAGATGACGAGATGCTCAGATGTAAAGTTTGTCAAAGTCCACATCCTAGAGGATTACCAAAAGTGTGTTTGGAGTTGGATCACTTTTTGGAGGAACAATTTCCTGAAGAATATGGACAGCGGAGAGATGCCATTGAACTAAAGCAAATCAAAGTCAAACCCGACACCCCTTCTTCTTGTTCATTGGATAATGGTAAAAGAGTAGAAAATATAGATTGGTGGTCTGATCCTGACCCAAAAGTTCACATTGGAGTTGGTTGCGATTTTTGCGGGGTAAAAGCTCTAGTCCATCATATCTGGCATCTTTTTGTTTTCTATTCCCTTTTGTTATCATTACTCTATTAATATTCTTTTTTTGTTCTATAGTAGGACATGCTCTCCAAATTTCTCTATTTCATTGACCTAGATAGGTGGCGGCCACTTTATGTGGTTGCTTGTCTTTTGTTAACTAATGGGTATTGACATTTCAGGTCTCACATGTTTGCAAAGGGAGTTAGAAATTCCCTGTTCTAGTTACTAACTTGCTTATTTGCATTTTTGCAGCACACTGCCAACTTACAATACTTAAACGCATTTTCATATGGTCCGAGATGATCACCTACACTAAATTAATGATTGCTTTCACAGATATTTATGTCATAACTAATTTCATTACTATTATTCTTCTAGTTCTCTGCAGTGTGCTAATGTGTGACTTCTCTGTACAGATGTTTCCAATAATTGGAGATAGATATAGATGCATTGACTGTAAGGAGAAGATGGGCTTTGATCTTTGTGGTGATTGCTACGCAAGCCGCTCGAAGCTTCCCGGTCGATTTAATCAACAACACACCTCAGAGCATAAGTTCAAGCTTGTACCACCGAACATTATTCATAACATGATGTTGAGGCTGGCCACAGCACAGTTAGGAGAAGGTTCTATTGACCTGGAGTCTATAGCAAACATAGAAGTTACTTCAGATGGTGCCGCTTTGTTTGATGATGGAGAAGATAACCACAATGATTCTGAAGCCACCAATTGAAAAAATGAGCTTAACAAAAAAAGTCCATGATCTAATAATTGATGTTTTTGGTGGGGGGGTTAAGTGGATAACTCCTAATTGTGGGAGGAGCAAATAATGCAATGTTTCAAGGAAGTTTGCTAGTCAATTGGTTGAGGAATTCTCAATTCTACGTGGTCTATGTGATTTTCTATTGCATGCCAACTTGACAGTGTATTTATGTCTTAACTGAATTTGTTTCCAGCTTGTGGCTATTTTATGTTATTGTATTAGGTGCACAAGCAATTCTGTTACGCCTTGATGGTAAGAATCTTGTACTTAACCTGGTTATTTGAACATATTCGGGAATGTATATTTGAACATATTCGGGAATGTACATATTCTAGGAGTTTGTCTGAGATCTACGATAATGTGTTTGTTGCaataatattaataataataGGCACATCATTGTGAATAATATATACCCCGGAGCAGCTTGTGTTATCATCCATAATTATATATAAGCTGTCCAGAAATTAGAC

>Glyma.18g171400.3 sequence-type=transcript locus=Glyma.18g171400 ID=Glyma.18g171400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATCTTGATTCTCCCCTGTTGCACCACCGCTTTCTTTCTCTCTCGCCCTCTCTCTGCGTTGTTGGAGAACATTCAGAAAAAAAAAGGAGAGTGAGCCGAAAAAAACAATTCAGAAAATGGAGAACAACGCATTCAGAGATCGAATCTTGGAGGACAATGAACACGAAGAAATCCCTGATTCCTTTGTTTGCTGCGTTTGTCTGGATCTATTATACAAGCCCATTGTGCTATCTTGTGGTCACATATGCTGTTTCTGGTGTGTCTATAATTCAATGAATTGTCTGCGGGAGTCTCAATGTCCAGTATGTAGGAATCAATATTATCACTTCCCAACAGTCTGCCAATTGCTTCACTTTTTACTTCTCAAGATCTATACCGCTGCTTACAAGAGAAGGGAAAACCAAACTCTTGAGGAAGAAAAGCAATCAGGATTCTACTCCCCTCAATTTGATCCTGATACATGTGAATCACAAGCTAAATTTGGTCATTCTGGGTCAGCTGCCAATGAAGGAGATGATGGCACCATCTATTATGATGGAGAGTCTGATATTATTGGAACTCCTGCTAAAGGAAAAAAAATGCCTCAGGAAGAGCTTTCTGTACAAAGGAAATTATCAGTTGCAGATGTGACTTGTACGATGTGCAAGCAACTGCTCTTTCATCCTGTAGTTCTTAATTGTGGTCATGTGTACTGTCAAACTTGTGTCATCAACATAGATGACGAGATGCTCAGATGTAAAGTTTGTCAAAGTCCACATCCTAGAGGATTACCAAAAGTGTGTTTGGAGTTGGATCACTTTTTGGAGGAACAATTTCCTGAAGAATATGGACAGCGGAGAGATGCCATTGAACTAAAGCAAATCAAAGTCAAACCCGACACCCCTTCTTCTTGTTCATTGGATAATGGTAAAAGAGTAGAAAATATAGATTGGTGGTCTGATCCTGACCCAAAAGTTCACATTGGAGTTGGTTGCGATTTTTGCGGGATGTTTCCAATAATTGGAGATAGATATAGATGCATTGACTGTAAGGAGAAGATGGGCTTTGATCTTTGTGGTGATTGCTACGCAAGCCGCTCGAAGCTTCCCGGTCGATTTAATCAACAACACACCTCAGAGCATAAGTTCAAGCTTGTACCACCGAACATTATTCATAACATGATGTTGAGGCTGGCCACAGCACAGTTAGGAGAAGGTTCTATTGACCTGGAGTCTATAGCAAACATAGAAGTTACTTCAGATGGTGCCGCTTTGTTTGATGATGGAGAAGATAACCACAATGATTCTGAAGCCACCAATTGAAAAAATGAGCTTAACAAAAAAAGTCCATGATCTAATAATTGATGTTTTTGGTGGGGGGGTTAAGTGGATAACTCCTAATTGTGGGAGGAGCAAATAATGCAATGTTTCAAGGAAGTTTGCTAGTCAATTGGTTGAGGAATTCTCAATTCTACGTGGTCTATGTGATTTTCTATTGCATGCCAACTTGACAGTGTATTTATGTCTTAACTGAATTTGTTTCCAGCTTGTGGCTATTTTATGTTATTGTATTAGGTGCACAAGCAATTCTGTTACGCCTTGATGGTAAGAATCTTGTACTTAACCTGGTTATTTGAACATATTCGGGAATGTATATTTGAACATATTCGGGAATGTACATATTCTAGGAGTTTGTCTGAGATCTACGATAATGTGTTTGTTGCaataatattaataataataGGCACATCATTGTGAATAATATATACCCCGGAGCAGCTTGTGTTATCATCCATAATTATATATAAGCTGTCCAGAAATTAGAC

Coding sequences of Glyma.18g171400

Limit To All Plant Sequences

>Glyma.18g171400.1 sequence-type=CDS polypeptide=Glyma.18g171400.1.p locus=Glyma.18g171400 ID=Glyma.18g171400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGAACAACGCATTCAGAGATCGAATCTTGGAGGACAATGAACACGAAGAAATCCCTGATTCCTTTGTTTGCTGCGTTTGTCTGGATCTATTATACAAGCCCATTGTGCTATCTTGTGGTCACATATGCTGTTTCTGGTGTGTCTATAATTCAATGAATTGTCTGCGGGAGTCTCAATGTCCAGTATGTAGGAATCAATATTATCACTTCCCAACAGTCTGCCAATTGCTTCACTTTTTACTTCTCAAGATCTATACCGCTGCTTACAAGAGAAGGGAAAACCAAACTCTTGAGGAAGAAAAGCAATCAGGATTCTACTCCCCTCAATTTGATCCTGATACATGTGAATCACAAGCTAAATTTGGTCATTCTGGTATCCCTAGTTCCTCCTCTAATTTGAATTTAACGTCCAACTCATGCAATGTGGGAACTTCTGAATGTCTGGAGCAATCAGGGTCAGCTGCCAATGAAGGAGATGATGGCACCATCTATTATGATGGAGAGTCTGATATTATTGGAACTCCTGCTAAAGGAAAAAAAATGCCTCAGGAAGAGCTTTCTGTACAAAGGAAATTATCAGTTGCAGATGTGACTTGTACGATGTGCAAGCAACTGCTCTTTCATCCTGTAGTTCTTAATTGTGGTCATGTGTACTGTCAAACTTGTGTCATCAACATAGATGACGAGATGCTCAGATGTAAAGTTTGTCAAAGTCCACATCCTAGAGGATTACCAAAAGTGTGTTTGGAGTTGGATCACTTTTTGGAGGAACAATTTCCTGAAGAATATGGACAGCGGAGAGATGCCATTGAACTAAAGCAAATCAAAGTCAAACCCGACACCCCTTCTTCTTGTTCATTGGATAATGGTAAAAGAGTAGAAAATATAGATTGGTGGTCTGATCCTGACCCAAAAGTTCACATTGGAGTTGGTTGCGATTTTTGCGGGATGTTTCCAATAATTGGAGATAGATATAGATGCATTGACTGTAAGGAGAAGATGGGCTTTGATCTTTGTGGTGATTGCTACGCAAGCCGCTCGAAGCTTCCCGGTCGATTTAATCAACAACACACCTCAGAGCATAAGTTCAAGCTTGTACCACCGAACATTATTCATAACATGATGTTGAGGCTGGCCACAGCACAGTTAGGAGAAGGTTCTATTGACCTGGAGTCTATAGCAAACATAGAAGTTACTTCAGATGGTGCCGCTTTGTTTGATGATGGAGAAGATAACCACAATGATTCTGAAGCCACCAATTGA

>Glyma.18g171400.2 sequence-type=CDS polypeptide=Glyma.18g171400.2.p locus=Glyma.18g171400 ID=Glyma.18g171400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGAACAACGCATTCAGAGATCGAATCTTGGAGGACAATGAACACGAAGAAATCCCTGATTCCTTTGTTTGCTGCGTTTGTCTGGATCTATTATACAAGCCCATTGTGCTATCTTGTGGTCACATATGCTGTTTCTGGTGTGTCTATAATTCAATGAATTGTCTGCGGGAGTCTCAATGTCCAGTATGTAGGAATCAATATTATCACTTCCCAACAGTCTGCCAATTGCTTCACTTTTTACTTCTCAAGATCTATACCGCTGCTTACAAGAGAAGGGAAAACCAAACTCTTGAGGAAGAAAAGCAATCAGGATTCTACTCCCCTCAATTTGATCCTGATACATGTGAATCACAAGCTAAATTTGGTCATTCTGGTATCCCTAGTTCCTCCTCTAATTTGAATTTAACGTCCAACTCATGCAATGTGGGAACTTCTGAATGTCTGGAGCAATCAGGGTCAGCTGCCAATGAAGGAGATGATGGCACCATCTATTATGATGGAGAGTCTGATATTATTGGAACTCCTGCTAAAGGAAAAAAAATGCCTCAGGAAGAGCTTTCTGTACAAAGGAAATTATCAGTTGCAGATGTGACTTGTACGATGTGCAAGCAACTGCTCTTTCATCCTGTAGTTCTTAATTGTGGTCATGTGTACTGTCAAACTTGTGTCATCAACATAGATGACGAGATGCTCAGATGTAAAGTTTGTCAAAGTCCACATCCTAGAGGATTACCAAAAGTGTGTTTGGAGTTGGATCACTTTTTGGAGGAACAATTTCCTGAAGAATATGGACAGCGGAGAGATGCCATTGAACTAAAGCAAATCAAAGTCAAACCCGACACCCCTTCTTCTTGTTCATTGGATAATGGTAAAAGAGTAGAAAATATAGATTGGTGGTCTGATCCTGACCCAAAAGTTCACATTGGAGTTGGTTGCGATTTTTGCGGGGTAAAAGCTCTAGTCCATCATATCTGGCATCTTTTTGTTTTCTATTCCCTTTTGTTATCATTACTCTATTAA

>Glyma.18g171400.3 sequence-type=CDS polypeptide=Glyma.18g171400.3.p locus=Glyma.18g171400 ID=Glyma.18g171400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGAACAACGCATTCAGAGATCGAATCTTGGAGGACAATGAACACGAAGAAATCCCTGATTCCTTTGTTTGCTGCGTTTGTCTGGATCTATTATACAAGCCCATTGTGCTATCTTGTGGTCACATATGCTGTTTCTGGTGTGTCTATAATTCAATGAATTGTCTGCGGGAGTCTCAATGTCCAGTATGTAGGAATCAATATTATCACTTCCCAACAGTCTGCCAATTGCTTCACTTTTTACTTCTCAAGATCTATACCGCTGCTTACAAGAGAAGGGAAAACCAAACTCTTGAGGAAGAAAAGCAATCAGGATTCTACTCCCCTCAATTTGATCCTGATACATGTGAATCACAAGCTAAATTTGGTCATTCTGGGTCAGCTGCCAATGAAGGAGATGATGGCACCATCTATTATGATGGAGAGTCTGATATTATTGGAACTCCTGCTAAAGGAAAAAAAATGCCTCAGGAAGAGCTTTCTGTACAAAGGAAATTATCAGTTGCAGATGTGACTTGTACGATGTGCAAGCAACTGCTCTTTCATCCTGTAGTTCTTAATTGTGGTCATGTGTACTGTCAAACTTGTGTCATCAACATAGATGACGAGATGCTCAGATGTAAAGTTTGTCAAAGTCCACATCCTAGAGGATTACCAAAAGTGTGTTTGGAGTTGGATCACTTTTTGGAGGAACAATTTCCTGAAGAATATGGACAGCGGAGAGATGCCATTGAACTAAAGCAAATCAAAGTCAAACCCGACACCCCTTCTTCTTGTTCATTGGATAATGGTAAAAGAGTAGAAAATATAGATTGGTGGTCTGATCCTGACCCAAAAGTTCACATTGGAGTTGGTTGCGATTTTTGCGGGATGTTTCCAATAATTGGAGATAGATATAGATGCATTGACTGTAAGGAGAAGATGGGCTTTGATCTTTGTGGTGATTGCTACGCAAGCCGCTCGAAGCTTCCCGGTCGATTTAATCAACAACACACCTCAGAGCATAAGTTCAAGCTTGTACCACCGAACATTATTCATAACATGATGTTGAGGCTGGCCACAGCACAGTTAGGAGAAGGTTCTATTGACCTGGAGTCTATAGCAAACATAGAAGTTACTTCAGATGGTGCCGCTTTGTTTGATGATGGAGAAGATAACCACAATGATTCTGAAGCCACCAATTGA

Predicted protein sequences of Glyma.18g171400

Limit To All Plant Sequences

>Glyma.18g171400.1.p sequence-type=predicted peptide transcript=Glyma.18g171400.1 locus=Glyma.18g171400 ID=Glyma.18g171400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MENNAFRDRILEDNEHEEIPDSFVCCVCLDLLYKPIVLSCGHICCFWCVYNSMNCLRESQCPVCRNQYYHFPTVCQLLHFLLLKIYTAAYKRRENQTLEEEKQSGFYSPQFDPDTCESQAKFGHSGIPSSSSNLNLTSNSCNVGTSECLEQSGSAANEGDDGTIYYDGESDIIGTPAKGKKMPQEELSVQRKLSVADVTCTMCKQLLFHPVVLNCGHVYCQTCVINIDDEMLRCKVCQSPHPRGLPKVCLELDHFLEEQFPEEYGQRRDAIELKQIKVKPDTPSSCSLDNGKRVENIDWWSDPDPKVHIGVGCDFCGMFPIIGDRYRCIDCKEKMGFDLCGDCYASRSKLPGRFNQQHTSEHKFKLVPPNIIHNMMLRLATAQLGEGSIDLESIANIEVTSDGAALFDDGEDNHNDSEATN*

>Glyma.18g171400.2.p sequence-type=predicted peptide transcript=Glyma.18g171400.2 locus=Glyma.18g171400 ID=Glyma.18g171400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MENNAFRDRILEDNEHEEIPDSFVCCVCLDLLYKPIVLSCGHICCFWCVYNSMNCLRESQCPVCRNQYYHFPTVCQLLHFLLLKIYTAAYKRRENQTLEEEKQSGFYSPQFDPDTCESQAKFGHSGIPSSSSNLNLTSNSCNVGTSECLEQSGSAANEGDDGTIYYDGESDIIGTPAKGKKMPQEELSVQRKLSVADVTCTMCKQLLFHPVVLNCGHVYCQTCVINIDDEMLRCKVCQSPHPRGLPKVCLELDHFLEEQFPEEYGQRRDAIELKQIKVKPDTPSSCSLDNGKRVENIDWWSDPDPKVHIGVGCDFCGVKALVHHIWHLFVFYSLLLSLLY*

>Glyma.18g171400.3.p sequence-type=predicted peptide transcript=Glyma.18g171400.3 locus=Glyma.18g171400 ID=Glyma.18g171400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MENNAFRDRILEDNEHEEIPDSFVCCVCLDLLYKPIVLSCGHICCFWCVYNSMNCLRESQCPVCRNQYYHFPTVCQLLHFLLLKIYTAAYKRRENQTLEEEKQSGFYSPQFDPDTCESQAKFGHSGSAANEGDDGTIYYDGESDIIGTPAKGKKMPQEELSVQRKLSVADVTCTMCKQLLFHPVVLNCGHVYCQTCVINIDDEMLRCKVCQSPHPRGLPKVCLELDHFLEEQFPEEYGQRRDAIELKQIKVKPDTPSSCSLDNGKRVENIDWWSDPDPKVHIGVGCDFCGMFPIIGDRYRCIDCKEKMGFDLCGDCYASRSKLPGRFNQQHTSEHKFKLVPPNIIHNMMLRLATAQLGEGSIDLESIANIEVTSDGAALFDDGEDNHNDSEATN*

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