Glyma.18g167500

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Report for Sequence Feature Glyma.18g167500

Feature Type:	gene_model
Chromosome:	Gm18
Start:	39259646
stop:	39265378
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.18g167500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G48140.1	AT	dolichol-phosphate mannosyltransferase-related	JGI	N/A	IEA
GO:0006486	GO-bp	protein glycosylation	EnsemblGenomes	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
PTHR16433	Panther	FAMILY NOT NAMED	JGI	N/A	IEA
PF08285	PFAM	Dolichol-phosphate mannosyltransferase subunit 3 (DPM3)	JGI	N/A	IEA
MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS	SoyCyc9	protein N-glycosylation initial phase (eukaryotic)	Plant Metabolic Network		ISS
GN7V-67911	SoyCyc9-rxn	dolichol phosphate mannose synthase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.18g167500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18g167500 not represented in the dataset	Glyma.18g167500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.18g167500

Paralog	Evidence	Comments
Glyma.08g349000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g167500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma18g36160	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.18g167500

Limit To All Plant Sequences

>Glyma.18g167500.2 sequence-type=transcript locus=Glyma.18g167500 ID=Glyma.18g167500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGATTTCCTCAACTAGACTCTCGAGGATGGATCCGTGTCTCAAAAACGCACGTTTAGTGGCGAACTGAACAAACAAACCCTTGATCCGTCATTGTATTTGTAACCTCGAATCGAAGGAGAAGACGTCCCTTTTGTTTCTGCGACTACTCTCCAAGTCCGGTTTTGGTCTTCTCTCCTCTCCTATCTCACTCGCGATTGCGTTTATTCTTGTTTGGTGGAGGATTTCGCCCACTGTTCTGGTGAAGGGGAAGACCTCGCTCACTTGGACTTAAACGGTGCCTGGATCCTCAGAGTTCAGAATACGTTTTCAAGCTATTGATAAATGAAGCATATTGTGAAGATTTTGACATTGGTAATGGCCATTACTGCATTATGGGTTGGCCTTCTACAAACTTCTATGATTCCACGCAGCCATACTTGTTACCCATATATTTTGTTGTGTCTTTAGGATGTTATGGTCTTTTAATGGTTGGAATTGGTTTGATGAATTTTCCAACCTGTCCTCAAGAAGCTCTATTGTTGCAGAAGGACATTGTTGAGGCCAAGGAATATCTGCAACAAAAAGGAGTTGATGTTAGTTCCAGCTGATGCGGTCTCAAATCTCGCATGATGTTCTGAATTAGCTTATGACAATTACCTGATTGGGAGTTGCGAAAGATTTTTGGCTTTTAACTTCATACACAAAATACTGATATGGGAATTGCTTTCGATTTTGGCTTAATGTACATGAACTCTTTACTATAATCAATGGATAACTTTTTCTGTTGGta

>Glyma.18g167500.3 sequence-type=transcript locus=Glyma.18g167500 ID=Glyma.18g167500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TAGACTCTCGAGGATGGATCCGTGTCTCAAAAACGCACGTTTAGTGGCGAACTGAACAAACAAACCCTTGATCCGTCATTGTATTTGTAACCTCGAATCGAAGGAGAAGACGTCCCTTTTGTTTCTGCGACTACTCTCCAAGTCCGGTTTTGGTCTTCTCTCCTCTCCTATCTCACTCGCGATTGCGTTTATTCTTGTTTGGTGGAGGATTTCGCCCACTGTTCTGGTGAAGGGGAAGACCTCGCTCACTTGGACTTAAACGGTGCCTGGATCCTCAGAGTTCAGAATACGTTTTCAAGCTGTAACAATTGATAAATGAAGCATATTGTGAAGATTTTGACATTGGTAATGGCCATTACTGCATTATGGGTTGGCCTTCTACAAACTTCTATGATTCCACGCAGCCATACTTGTTACCCATATATTTTGTTGTGTCTTTAGGATGTTATGGTCTTTTAATGGTTGGAATTGGTTTGATGAATTTTCCAACCTGTCCTCAAGAAGCTCTATTGTTGCAGAAGGACATTGTTGAGGCCAAGGAATATCTGCAACAAAAAGGAGTTGATGTTAGTTCCAGCTGATGCGGTCTCAAATCTCGCATGATGTTCTGAATTAGCTTATGACAATTACCTGATTGGGAGTTGCGAAAGATTTTTGGCTTTTAACTTCATACACAAAATACTGATATGGGAATTGCTTTCGATTTTGGCTTAATGTACATGAACTCTTTACTATAATCAATGGATAAC

Coding sequences of Glyma.18g167500

Limit To All Plant Sequences

>Glyma.18g167500.1 sequence-type=CDS polypeptide=Glyma.18g167500.1.p locus=Glyma.18g167500 ID=Glyma.18g167500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTTGGCCTTCTACAAACTTCTATGATTCCACGCAGCCATACTTGTTACCCATATATTTTGTTGTGTCTTTAGGATGTTATGGTCTTTTAATGGTTGGAATTGGTTTGATGAATTTTCCAACCTGTCCTCAAGAAGCTCTATTGTTGCAGAAGGACATTGTTGAGGCCAAGGAATATCTGCAACAAAAAGGAGTTGATGTTAGTTCCAGCTGA

>Glyma.18g167500.2 sequence-type=CDS polypeptide=Glyma.18g167500.2.p locus=Glyma.18g167500 ID=Glyma.18g167500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTTGGCCTTCTACAAACTTCTATGATTCCACGCAGCCATACTTGTTACCCATATATTTTGTTGTGTCTTTAGGATGTTATGGTCTTTTAATGGTTGGAATTGGTTTGATGAATTTTCCAACCTGTCCTCAAGAAGCTCTATTGTTGCAGAAGGACATTGTTGAGGCCAAGGAATATCTGCAACAAAAAGGAGTTGATGTTAGTTCCAGCTGA

>Glyma.18g167500.3 sequence-type=CDS polypeptide=Glyma.18g167500.3.p locus=Glyma.18g167500 ID=Glyma.18g167500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTTGGCCTTCTACAAACTTCTATGATTCCACGCAGCCATACTTGTTACCCATATATTTTGTTGTGTCTTTAGGATGTTATGGTCTTTTAATGGTTGGAATTGGTTTGATGAATTTTCCAACCTGTCCTCAAGAAGCTCTATTGTTGCAGAAGGACATTGTTGAGGCCAAGGAATATCTGCAACAAAAAGGAGTTGATGTTAGTTCCAGCTGA

Predicted protein sequences of Glyma.18g167500

Limit To All Plant Sequences

>Glyma.18g167500.1.p sequence-type=predicted peptide transcript=Glyma.18g167500.1 locus=Glyma.18g167500 ID=Glyma.18g167500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGWPSTNFYDSTQPYLLPIYFVVSLGCYGLLMVGIGLMNFPTCPQEALLLQKDIVEAKEYLQQKGVDVSSS*

>Glyma.18g167500.2.p sequence-type=predicted peptide transcript=Glyma.18g167500.2 locus=Glyma.18g167500 ID=Glyma.18g167500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGWPSTNFYDSTQPYLLPIYFVVSLGCYGLLMVGIGLMNFPTCPQEALLLQKDIVEAKEYLQQKGVDVSSS*

>Glyma.18g167500.3.p sequence-type=predicted peptide transcript=Glyma.18g167500.3 locus=Glyma.18g167500 ID=Glyma.18g167500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGWPSTNFYDSTQPYLLPIYFVVSLGCYGLLMVGIGLMNFPTCPQEALLLQKDIVEAKEYLQQKGVDVSSS*

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