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Report for Sequence Feature Glyma.18g166800

Feature Type:gene_model
Chromosome:Gm18
Start:39063147
stop:39068309
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g166800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G25070.1AT RPM1 interacting protein 4 JGI N/AIEA
PF05627PFAM Cleavage site for pathogenic type III effector avirulence factor Avr JGI N/AIEA

Proteins Associated with Glyma.18g166800
LocusGene SymbolProtein Name
RIN4c RIN4c protein

Expression Patterns of Glyma.18g166800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g166800
ParalogEvidenceComments
Glyma.08g349500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g166800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g36000 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g166800
>Glyma.18g166800.1 sequence-type=CDS polypeptide=Glyma.18g166800.1.p locus=Glyma.18g166800 ID=Glyma.18g166800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTCAACGTTCTAATGTTCCAATGTTAGGCAAGAGTGAAGAGAATGTTTCAGATACAGCTCATTCTGACAAAGCCCAGAAAGGTCAGCCAGGTTCAAAGATGATTAATCCAAATGACACCAAGGAAAATTCAGATGTAGTTTCTTCTGCTGGCCTACCCCATTCAAAACCCAGAGTTCATTCAGAGGATCCATCTGGAAAGGGATCAGTGAGATCAATACATGAGTTACAAATGAGTAGGGAGGATGGTGATCCTAAACAATTTACTGACTCTCCAGCTCGCCATGGTGGCAGTGATTCTGCCTATCGAGGTCACGGAGTAGGTTCTGCTGACAACCGTAAAAGACCTTCAAGACAAAGTACTGGGTCTGAGCACAGCATTGACCGTTCACCCCTTCATCGCCAGGCAAAGACCCCTGGAAGAGATAGTCCTTCTTGGGAAGGAAAAAATTCATATGACAGTAGCCATGGTACCCCAGGAAGGTCCCGATTAAGACCACCTAACCGAGGGGATGAAACTCCTGATAAAGGTGCTGCTGTTCCAAAGTTTGGTGAGTGGGATGAGAGCAACCCTGCATCGGCTGATGGCTACACTCACATTTTCAACAAAGTGCGGGAGGAGAAACAGGTGGGGGCTGGACACGTGCCAGTTACGCCTAATGGGAGACAATATGCTGCTCGGAACCAACCTGCCGACGACAAAGCTCAGAGTTGCTGCTTTTGCTGGGGCAAAAAATGA
Predicted protein sequences of Glyma.18g166800
>Glyma.18g166800.1.p sequence-type=predicted peptide transcript=Glyma.18g166800.1 locus=Glyma.18g166800 ID=Glyma.18g166800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAQRSNVPMLGKSEENVSDTAHSDKAQKGQPGSKMINPNDTKENSDVVSSAGLPHSKPRVHSEDPSGKGSVRSIHELQMSREDGDPKQFTDSPARHGGSDSAYRGHGVGSADNRKRPSRQSTGSEHSIDRSPLHRQAKTPGRDSPSWEGKNSYDSSHGTPGRSRLRPPNRGDETPDKGAAVPKFGEWDESNPASADGYTHIFNKVREEKQVGAGHVPVTPNGRQYAARNQPADDKAQSCCFCWGKK*






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