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Report for Sequence Feature Glyma.18g166600

Feature Type:gene_model
Chromosome:Gm18
Start:38955092
stop:38962893
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g166600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G07180.1AT GPI transamidase component PIG-S-related JGI N/AIEA
GO:0016255GO-bp attachment of GPI anchor to protein EnsemblGenomesN/AIEA
GO:0016255GO-bp attachment of GPI anchor to protein JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0042765GO-cc GPI-anchor transamidase complex EnsemblGenomesN/AIEA
GO:0042765GO-cc GPI-anchor transamidase complex JGI N/AIEA
KOG2459 KOG GPI transamidase complex, GPI17/PIG-S component, involved in glycosylphosphatidylinositol anchor biosynthesis JGI N/AIEA
PTHR21072Panther FAMILY NOT NAMED JGI N/AIEA
PTHR21072:SF5Panther JGI N/AIEA
PF10510PFAM Phosphatidylinositol-glycan biosynthesis class S protein JGI N/AIEA

Expression Patterns of Glyma.18g166600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g166600
ParalogEvidenceComments
Glyma.08g349700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g166600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g35940 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g166600
>Glyma.18g166600.2 sequence-type=transcript locus=Glyma.18g166600 ID=Glyma.18g166600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACGAATTCGAATTAGCAAAACCTGGGATCAACAATGGCGGAAATCTCCGATTCGCCATCAACTTCAAAATCCGCCGAAGAAAACACCCAAACTCAAACGCCAGAATCTGACCTGAAAACCACGCGAAACACAAAACCCGGCGTCAAACGCCTCATCATCAGCGTCACTGTGCTCTTCTCTTTCATCCTAGGTTTTCCTCTTCTGTGGAAATCCATCGAAATCTACCGCGCGCCGCTCCCGTTCGATCGAATCGACGCCTTCTCCTCCCAAATCGAATCGAAACCCTTGTCCTTCCCATGCCACTTTCAAGCCATTTTCATCGGTTTCGATTTCGATTTCAAGGTTTCGCACGACGATGTAGGAGCCGCGATCGCGAGGAAAATGTCGGACCTAAGTCACGGCGGCGGTTGCGGCGGATGTGGTGGTAATTACTCTGTTGCCGTGGCGGTGGACAGGGGAGACATTAATGCGTTTGATTTTGGCGAGAAGCTGAGAGGTAGTGACGAGGATGCTGATGAATTGGTGAAGAGTGTGGTGAGTGAGTATGGAGGAGGGAATGCGTATAGCGTTGTGGTGGTGAATGAAGAGGGGGAGGTGAGGAGTGTGGTGGGGAAGTATAGGCATGCGTGGATCGTGGGGCGGGTTGAGGAGGAGGAGGCAGTGTTGCATGTGGCTGAGGTTTTTGTTAAGGTTTTTGTTAATGGCGGGGACGTGGAGGGTTCAGTTCGCAGCGAGTTTATGCCTGTTGGTGCTGATGGGAGGATTGTTCTCTCTTTCAGTTTACTCAATGCAGACCCTCGAGATTGGATATATGATTGGAATTTTCGTGAAATTGATGAGACTTTGTTACGACCAGTGATTGAGGCTTTACAACCTATAGCAAACATCACTGTTGAAAGCCAGGTTTTGTACCATACACCAAAGTCTTCATTTTCTTACTGGGATGATAAGCATGGAAGCCACATGTTTAGAACCGAGGATCTTCCTTTCTTCGTGAATTCAAATGAGTGGCACTTGGATACTTCTGTTGCAGCAGGAGGAAGGTCAAAAGTATTGCAACTCGTGGTGTATATACCATCTGCAAAGGAGTGTCCACTTCAACTGGAGCTTCCAAATGGGGAGATCTCTAAAACTAACGGCTTTATATCTCCAATGTGGGGAGGTGTTGTTGTCTGGAATCCCCAAAGCTGTATAAAAGATTTTGAAAGTATGGATCCAGTTAGGCATACGATTTCTCCCCAGGATCTCCTGAAGCTTTTTGAGGTTCTCATGGGGCAGTTGCGGCAACTCCTTGGTCTGAAGTCAGATAACCTTTATGTTGGTGAGTCAGGCACATCTATTCTCCTAGGCAGTGAAAGAGGTTTCACAGAATGGTAAGAATAATAGTCCTTTTTCTACCCTTTACAGAAATTATTAACTACATATTTTATGAAGTACTGGTAAGAATAATAGTCCTTTTTCTTTGTTTTGTTCTACTAAGATATATTGAAAGCTTGATACTGGCTACTTGTGTTTAACTCAATAATGGAAGTGCTGGATGAGTGTTATATTTCAACTTTATTTATTTTCACAAGTTCCTGTGGTGAGCATATGTCCTGAAGGGGAAAATCTTATTGAACTGAATACTTTTGTAATTGATTATGTACTCCCTTAAGTTCCAAATTGAATGGATTGTAAATAAAAAAAAGTATGATTAAGTCTGACTCAGAAGAATTGTGGTACATAAAGCATTAGTTGGATACTACTATTAGCTGTAAGAAATTGATATATATTTGCCATATCAAGATTGTGTCAGAAGAAGAGACGAAGATTGCTGTTTTCCATGTAGCCAACAATTTGGGCCACTCCATAGGTGTCCTGAAAGGAAGTTAAGAGTGTTTATTTTGGGGGGAAATGAAGGGGGAGAAGGAGAATTTGAAAGGGTTAAATTGATGGAACCAAATTCAAATGTTGATATGAAAGGTACAGTTTCCTTATTTCAGCTGCTTCTGTACTTGGGAGGCATTGATAGGAAGCCCTGAATTAAGCAGTTATTTTTGTACTAATTTTTTATTAGTCAGTTCTATGCTAGTTTGACAGTTATAATGATATATAGGTGGTGTCACATACTATAATAAGACAAGGTGTCACATTGTTATTTCTAGTGTTTTGAGGGAGGAAACTTCTTGTTGGGGGGAAACCTTGTATTTGTTGAAGTTTGTACTCATATCTGGCTTAAAACACCAGATTATTTCTATAATTTATTAGGAATTCAGTGTATTTATTGAGTCCAACATGCACCCCTCTTTGATTATTCTATTGCTATTTTTCTTTCTTTCTTATACAATAGGGACTTTACATAGTCACTCACTCATTCTCTGTATCCTTTAGGTTGGTTGTGTTGCTCTATTTTCATTCTTCTAAAATGAGGGCTTAACTTGGTCACTTGTTCGCTTTATGCGCACTTTATTTGGCTATATAAATGCTTTGTTCTCCTTCTAACTTATGACATGGCATATGGACATA
Coding sequences of Glyma.18g166600
>Glyma.18g166600.1 sequence-type=CDS polypeptide=Glyma.18g166600.1.p locus=Glyma.18g166600 ID=Glyma.18g166600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGAAATCTCCGATTCGCCATCAACTTCAAAATCCGCCGAAGAAAACACCCAAACTCAAACGCCAGAATCTGACCTGAAAACCACGCGAAACACAAAACCCGGCGTCAAACGCCTCATCATCAGCGTCACTGTGCTCTTCTCTTTCATCCTAGGTTTTCCTCTTCTGTGGAAATCCATCGAAATCTACCGCGCGCCGCTCCCGTTCGATCGAATCGACGCCTTCTCCTCCCAAATCGAATCGAAACCCTTGTCCTTCCCATGCCACTTTCAAGCCATTTTCATCGGTTTCGATTTCGATTTCAAGGTTTCGCACGACGATGTAGGAGCCGCGATCGCGAGGAAAATGTCGGACCTAAGTCACGGCGGCGGTTGCGGCGGATGTGGTGGTAATTACTCTGTTGCCGTGGCGGTGGACAGGGGAGACATTAATGCGTTTGATTTTGGCGAGAAGCTGAGAGGTAGTGACGAGGATGCTGATGAATTGGTGAAGAGTGTGGTGAGTGAGTATGGAGGAGGGAATGCGTATAGCGTTGTGGTGGTGAATGAAGAGGGGGAGGTGAGGAGTGTGGTGGGGAAGTATAGGCATGCGTGGATCGTGGGGCGGGTTGAGGAGGAGGAGGCAGTGTTGCATGTGGCTGAGGTTTTTGTTAAGGTTTTTGTTAATGGCGGGGACGTGGAGGGTTCAGTTCGCAGCGAGTTTATGCCTGTTGGTGCTGATGGGAGGATTGTTCTCTCTTTCAGTTTACTCAATGCAGACCCTCGAGATTGGATATATGATTGGAATTTTCGTGAAATTGATGAGACTTTGTTACGACCAGTGATTGAGGCTTTACAACCTATAGCAAACATCACTGTTGAAAGCCAGGTTTTGTACCATACACCAAAGTCTTCATTTTCTTACTGGGATGATAAGCATGGAAGCCACATGTTTAGAACCGAGGATCTTCCTTTCTTCGTGAATTCAAATGAGTGGCACTTGGATACTTCTGTTGCAGCAGGAGGAAGGTCAAAAGTATTGCAACTCGTGGTGTATATACCATCTGCAAAGGAGTGTCCACTTCAACTGGAGCTTCCAAATGGGGAGATCTCTAAAACTAACGGCTTTATATCTCCAATGTGGGGAGGTGTTGTTGTCTGGAATCCCCAAAGCTGTATAAAAGATTTTGAAAGTATGGATCCAGTTAGGCATACGATTTCTCCCCAGGATCTCCTGAAGCTTTTTGAGGTTCTCATGGGGCAGTTGCGGCAACTCCTTGGTCTGAAGTCAGATAACCTTTATGTTGGTGAGTCAGGCACATCTATTCTCCTAGGCAGTGAAAGAGGTTTCACAGAATGGGAGTTGGATGTTTTGTCACGGAAGCATATATGCTTTAATCTTCATTCATGTGCTACTACGCTTGGATCACTTTCTAGATTGGTACAATCATTGCCAAGGATGATTATCATGGATGAGATTGGAAAACAGGTTAAGTTTTCTCTTGAGGCTGCAAAATTTGCTCAAAGTAATGCATCTATTGGAATATATAATGCTTCAGCTGTATCATCAAGACAATCAAGATCTCTGGCAGAGGATGCCTTTTTTCATCCTTCAATTATGTCCATAAGCTATTATTCATTTGAGCACTGCTTTGCCATCTATTCGCCATTTTTTCTGCCAGTTACTATGCATGTCCTCCTTGCTGCTTTACGAGAATGGAAAAGGTACAAGCAAGAAAATAGGAAGTACTTAGCATCGAAGGCCAAAGTAAAAGTTTCATAA

>Glyma.18g166600.2 sequence-type=CDS polypeptide=Glyma.18g166600.2.p locus=Glyma.18g166600 ID=Glyma.18g166600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGAAATCTCCGATTCGCCATCAACTTCAAAATCCGCCGAAGAAAACACCCAAACTCAAACGCCAGAATCTGACCTGAAAACCACGCGAAACACAAAACCCGGCGTCAAACGCCTCATCATCAGCGTCACTGTGCTCTTCTCTTTCATCCTAGGTTTTCCTCTTCTGTGGAAATCCATCGAAATCTACCGCGCGCCGCTCCCGTTCGATCGAATCGACGCCTTCTCCTCCCAAATCGAATCGAAACCCTTGTCCTTCCCATGCCACTTTCAAGCCATTTTCATCGGTTTCGATTTCGATTTCAAGGTTTCGCACGACGATGTAGGAGCCGCGATCGCGAGGAAAATGTCGGACCTAAGTCACGGCGGCGGTTGCGGCGGATGTGGTGGTAATTACTCTGTTGCCGTGGCGGTGGACAGGGGAGACATTAATGCGTTTGATTTTGGCGAGAAGCTGAGAGGTAGTGACGAGGATGCTGATGAATTGGTGAAGAGTGTGGTGAGTGAGTATGGAGGAGGGAATGCGTATAGCGTTGTGGTGGTGAATGAAGAGGGGGAGGTGAGGAGTGTGGTGGGGAAGTATAGGCATGCGTGGATCGTGGGGCGGGTTGAGGAGGAGGAGGCAGTGTTGCATGTGGCTGAGGTTTTTGTTAAGGTTTTTGTTAATGGCGGGGACGTGGAGGGTTCAGTTCGCAGCGAGTTTATGCCTGTTGGTGCTGATGGGAGGATTGTTCTCTCTTTCAGTTTACTCAATGCAGACCCTCGAGATTGGATATATGATTGGAATTTTCGTGAAATTGATGAGACTTTGTTACGACCAGTGATTGAGGCTTTACAACCTATAGCAAACATCACTGTTGAAAGCCAGGTTTTGTACCATACACCAAAGTCTTCATTTTCTTACTGGGATGATAAGCATGGAAGCCACATGTTTAGAACCGAGGATCTTCCTTTCTTCGTGAATTCAAATGAGTGGCACTTGGATACTTCTGTTGCAGCAGGAGGAAGGTCAAAAGTATTGCAACTCGTGGTGTATATACCATCTGCAAAGGAGTGTCCACTTCAACTGGAGCTTCCAAATGGGGAGATCTCTAAAACTAACGGCTTTATATCTCCAATGTGGGGAGGTGTTGTTGTCTGGAATCCCCAAAGCTGTATAAAAGATTTTGAAAGTATGGATCCAGTTAGGCATACGATTTCTCCCCAGGATCTCCTGAAGCTTTTTGAGGTTCTCATGGGGCAGTTGCGGCAACTCCTTGGTCTGAAGTCAGATAACCTTTATGTTGGTGAGTCAGGCACATCTATTCTCCTAGGCAGTGAAAGAGGTTTCACAGAATGGTAA
Predicted protein sequences of Glyma.18g166600
>Glyma.18g166600.1.p sequence-type=predicted peptide transcript=Glyma.18g166600.1 locus=Glyma.18g166600 ID=Glyma.18g166600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAEISDSPSTSKSAEENTQTQTPESDLKTTRNTKPGVKRLIISVTVLFSFILGFPLLWKSIEIYRAPLPFDRIDAFSSQIESKPLSFPCHFQAIFIGFDFDFKVSHDDVGAAIARKMSDLSHGGGCGGCGGNYSVAVAVDRGDINAFDFGEKLRGSDEDADELVKSVVSEYGGGNAYSVVVVNEEGEVRSVVGKYRHAWIVGRVEEEEAVLHVAEVFVKVFVNGGDVEGSVRSEFMPVGADGRIVLSFSLLNADPRDWIYDWNFREIDETLLRPVIEALQPIANITVESQVLYHTPKSSFSYWDDKHGSHMFRTEDLPFFVNSNEWHLDTSVAAGGRSKVLQLVVYIPSAKECPLQLELPNGEISKTNGFISPMWGGVVVWNPQSCIKDFESMDPVRHTISPQDLLKLFEVLMGQLRQLLGLKSDNLYVGESGTSILLGSERGFTEWELDVLSRKHICFNLHSCATTLGSLSRLVQSLPRMIIMDEIGKQVKFSLEAAKFAQSNASIGIYNASAVSSRQSRSLAEDAFFHPSIMSISYYSFEHCFAIYSPFFLPVTMHVLLAALREWKRYKQENRKYLASKAKVKVS*

>Glyma.18g166600.2.p sequence-type=predicted peptide transcript=Glyma.18g166600.2 locus=Glyma.18g166600 ID=Glyma.18g166600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAEISDSPSTSKSAEENTQTQTPESDLKTTRNTKPGVKRLIISVTVLFSFILGFPLLWKSIEIYRAPLPFDRIDAFSSQIESKPLSFPCHFQAIFIGFDFDFKVSHDDVGAAIARKMSDLSHGGGCGGCGGNYSVAVAVDRGDINAFDFGEKLRGSDEDADELVKSVVSEYGGGNAYSVVVVNEEGEVRSVVGKYRHAWIVGRVEEEEAVLHVAEVFVKVFVNGGDVEGSVRSEFMPVGADGRIVLSFSLLNADPRDWIYDWNFREIDETLLRPVIEALQPIANITVESQVLYHTPKSSFSYWDDKHGSHMFRTEDLPFFVNSNEWHLDTSVAAGGRSKVLQLVVYIPSAKECPLQLELPNGEISKTNGFISPMWGGVVVWNPQSCIKDFESMDPVRHTISPQDLLKLFEVLMGQLRQLLGLKSDNLYVGESGTSILLGSERGFTEW*






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