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A previous version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT3G07180.1 | AT | GPI transamidase component PIG-S-related | JGI | N/A | IEA |
GO:0016255 | GO-bp | attachment of GPI anchor to protein | EnsemblGenomes | N/A | IEA |
GO:0016255 | GO-bp | attachment of GPI anchor to protein | JGI | N/A | IEA |
GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
GO:0042765 | GO-cc | GPI-anchor transamidase complex | EnsemblGenomes | N/A | IEA |
GO:0042765 | GO-cc | GPI-anchor transamidase complex | JGI | N/A | IEA |
KOG2459 | KOG | GPI transamidase complex, GPI17/PIG-S component, involved in glycosylphosphatidylinositol anchor biosynthesis | JGI | N/A | IEA |
PTHR21072 | Panther | FAMILY NOT NAMED | JGI | N/A | IEA |
PTHR21072:SF5 | Panther | JGI | N/A | IEA | |
PF10510 | PFAM | Phosphatidylinositol-glycan biosynthesis class S protein | JGI | N/A | IEA |
Glyma.18g166600 not represented in the dataset |
Glyma.18g166600 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
Paralog | Evidence | Comments |
---|---|---|
Glyma.08g349700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma18g35940 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.18g166600.2 sequence-type=transcript locus=Glyma.18g166600 ID=Glyma.18g166600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ACGAATTCGAATTAGCAAAACCTGGGATCAACAATGGCGGAAATCTCCGATTCGCCATCAACTTCAAAATCCGCCGAAGAAAACACCCAAACTCAAACGCCAGAATCTGACCTGAAAACCACGCGAAACACAAAACCCGGCGTCAAACGCCTCATCATCAGCGTCACTGTGCTCTTCTCTTTCATCCTAGGTTTTCCTCTTCTGTGGAAATCCATCGAAATCTACCGCGCGCCGCTCCCGTTCGATCGAATCGACGCCTTCTCCTCCCAAATCGAATCGAAACCCTTGTCCTTCCCATGCCACTTTCAAGCCATTTTCATCGGTTTCGATTTCGATTTCAAGGTTTCGCACGACGATGTAGGAGCCGCGATCGCGAGGAAAATGTCGGACCTAAGTCACGGCGGCGGTTGCGGCGGATGTGGTGGTAATTACTCTGTTGCCGTGGCGGTGGACAGGGGAGACATTAATGCGTTTGATTTTGGCGAGAAGCTGAGAGGTAGTGACGAGGATGCTGATGAATTGGTGAAGAGTGTGGTGAGTGAGTATGGAGGAGGGAATGCGTATAGCGTTGTGGTGGTGAATGAAGAGGGGGAGGTGAGGAGTGTGGTGGGGAAGTATAGGCATGCGTGGATCGTGGGGCGGGTTGAGGAGGAGGAGGCAGTGTTGCATGTGGCTGAGGTTTTTGTTAAGGTTTTTGTTAATGGCGGGGACGTGGAGGGTTCAGTTCGCAGCGAGTTTATGCCTGTTGGTGCTGATGGGAGGATTGTTCTCTCTTTCAGTTTACTCAATGCAGACCCTCGAGATTGGATATATGATTGGAATTTTCGTGAAATTGATGAGACTTTGTTACGACCAGTGATTGAGGCTTTACAACCTATAGCAAACATCACTGTTGAAAGCCAGGTTTTGTACCATACACCAAAGTCTTCATTTTCTTACTGGGATGATAAGCATGGAAGCCACATGTTTAGAACCGAGGATCTTCCTTTCTTCGTGAATTCAAATGAGTGGCACTTGGATACTTCTGTTGCAGCAGGAGGAAGGTCAAAAGTATTGCAACTCGTGGTGTATATACCATCTGCAAAGGAGTGTCCACTTCAACTGGAGCTTCCAAATGGGGAGATCTCTAAAACTAACGGCTTTATATCTCCAATGTGGGGAGGTGTTGTTGTCTGGAATCCCCAAAGCTGTATAAAAGATTTTGAAAGTATGGATCCAGTTAGGCATACGATTTCTCCCCAGGATCTCCTGAAGCTTTTTGAGGTTCTCATGGGGCAGTTGCGGCAACTCCTTGGTCTGAAGTCAGATAACCTTTATGTTGGTGAGTCAGGCACATCTATTCTCCTAGGCAGTGAAAGAGGTTTCACAGAATGGTAAGAATAATAGTCCTTTTTCTACCCTTTACAGAAATTATTAACTACATATTTTATGAAGTACTGGTAAGAATAATAGTCCTTTTTCTTTGTTTTGTTCTACTAAGATATATTGAAAGCTTGATACTGGCTACTTGTGTTTAACTCAATAATGGAAGTGCTGGATGAGTGTTATATTTCAACTTTATTTATTTTCACAAGTTCCTGTGGTGAGCATATGTCCTGAAGGGGAAAATCTTATTGAACTGAATACTTTTGTAATTGATTATGTACTCCCTTAAGTTCCAAATTGAATGGATTGTAAATAAAAAAAAGTATGATTAAGTCTGACTCAGAAGAATTGTGGTACATAAAGCATTAGTTGGATACTACTATTAGCTGTAAGAAATTGATATATATTTGCCATATCAAGATTGTGTCAGAAGAAGAGACGAAGATTGCTGTTTTCCATGTAGCCAACAATTTGGGCCACTCCATAGGTGTCCTGAAAGGAAGTTAAGAGTGTTTATTTTGGGGGGAAATGAAGGGGGAGAAGGAGAATTTGAAAGGGTTAAATTGATGGAACCAAATTCAAATGTTGATATGAAAGGTACAGTTTCCTTATTTCAGCTGCTTCTGTACTTGGGAGGCATTGATAGGAAGCCCTGAATTAAGCAGTTATTTTTGTACTAATTTTTTATTAGTCAGTTCTATGCTAGTTTGACAGTTATAATGATATATAGGTGGTGTCACATACTATAATAAGACAAGGTGTCACATTGTTATTTCTAGTGTTTTGAGGGAGGAAACTTCTTGTTGGGGGGAAACCTTGTATTTGTTGAAGTTTGTACTCATATCTGGCTTAAAACACCAGATTATTTCTATAATTTATTAGGAATTCAGTGTATTTATTGAGTCCAACATGCACCCCTCTTTGATTATTCTATTGCTATTTTTCTTTCTTTCTTATACAATAGGGACTTTACATAGTCACTCACTCATTCTCTGTATCCTTTAGGTTGGTTGTGTTGCTCTATTTTCATTCTTCTAAAATGAGGGCTTAACTTGGTCACTTGTTCGCTTTATGCGCACTTTATTTGGCTATATAAATGCTTTGTTCTCCTTCTAACTTATGACATGGCATATGGACATA
>Glyma.18g166600.1 sequence-type=CDS polypeptide=Glyma.18g166600.1.p locus=Glyma.18g166600 ID=Glyma.18g166600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGGAAATCTCCGATTCGCCATCAACTTCAAAATCCGCCGAAGAAAACACCCAAACTCAAACGCCAGAATCTGACCTGAAAACCACGCGAAACACAAAACCCGGCGTCAAACGCCTCATCATCAGCGTCACTGTGCTCTTCTCTTTCATCCTAGGTTTTCCTCTTCTGTGGAAATCCATCGAAATCTACCGCGCGCCGCTCCCGTTCGATCGAATCGACGCCTTCTCCTCCCAAATCGAATCGAAACCCTTGTCCTTCCCATGCCACTTTCAAGCCATTTTCATCGGTTTCGATTTCGATTTCAAGGTTTCGCACGACGATGTAGGAGCCGCGATCGCGAGGAAAATGTCGGACCTAAGTCACGGCGGCGGTTGCGGCGGATGTGGTGGTAATTACTCTGTTGCCGTGGCGGTGGACAGGGGAGACATTAATGCGTTTGATTTTGGCGAGAAGCTGAGAGGTAGTGACGAGGATGCTGATGAATTGGTGAAGAGTGTGGTGAGTGAGTATGGAGGAGGGAATGCGTATAGCGTTGTGGTGGTGAATGAAGAGGGGGAGGTGAGGAGTGTGGTGGGGAAGTATAGGCATGCGTGGATCGTGGGGCGGGTTGAGGAGGAGGAGGCAGTGTTGCATGTGGCTGAGGTTTTTGTTAAGGTTTTTGTTAATGGCGGGGACGTGGAGGGTTCAGTTCGCAGCGAGTTTATGCCTGTTGGTGCTGATGGGAGGATTGTTCTCTCTTTCAGTTTACTCAATGCAGACCCTCGAGATTGGATATATGATTGGAATTTTCGTGAAATTGATGAGACTTTGTTACGACCAGTGATTGAGGCTTTACAACCTATAGCAAACATCACTGTTGAAAGCCAGGTTTTGTACCATACACCAAAGTCTTCATTTTCTTACTGGGATGATAAGCATGGAAGCCACATGTTTAGAACCGAGGATCTTCCTTTCTTCGTGAATTCAAATGAGTGGCACTTGGATACTTCTGTTGCAGCAGGAGGAAGGTCAAAAGTATTGCAACTCGTGGTGTATATACCATCTGCAAAGGAGTGTCCACTTCAACTGGAGCTTCCAAATGGGGAGATCTCTAAAACTAACGGCTTTATATCTCCAATGTGGGGAGGTGTTGTTGTCTGGAATCCCCAAAGCTGTATAAAAGATTTTGAAAGTATGGATCCAGTTAGGCATACGATTTCTCCCCAGGATCTCCTGAAGCTTTTTGAGGTTCTCATGGGGCAGTTGCGGCAACTCCTTGGTCTGAAGTCAGATAACCTTTATGTTGGTGAGTCAGGCACATCTATTCTCCTAGGCAGTGAAAGAGGTTTCACAGAATGGGAGTTGGATGTTTTGTCACGGAAGCATATATGCTTTAATCTTCATTCATGTGCTACTACGCTTGGATCACTTTCTAGATTGGTACAATCATTGCCAAGGATGATTATCATGGATGAGATTGGAAAACAGGTTAAGTTTTCTCTTGAGGCTGCAAAATTTGCTCAAAGTAATGCATCTATTGGAATATATAATGCTTCAGCTGTATCATCAAGACAATCAAGATCTCTGGCAGAGGATGCCTTTTTTCATCCTTCAATTATGTCCATAAGCTATTATTCATTTGAGCACTGCTTTGCCATCTATTCGCCATTTTTTCTGCCAGTTACTATGCATGTCCTCCTTGCTGCTTTACGAGAATGGAAAAGGTACAAGCAAGAAAATAGGAAGTACTTAGCATCGAAGGCCAAAGTAAAAGTTTCATAA >Glyma.18g166600.2 sequence-type=CDS polypeptide=Glyma.18g166600.2.p locus=Glyma.18g166600 ID=Glyma.18g166600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGGAAATCTCCGATTCGCCATCAACTTCAAAATCCGCCGAAGAAAACACCCAAACTCAAACGCCAGAATCTGACCTGAAAACCACGCGAAACACAAAACCCGGCGTCAAACGCCTCATCATCAGCGTCACTGTGCTCTTCTCTTTCATCCTAGGTTTTCCTCTTCTGTGGAAATCCATCGAAATCTACCGCGCGCCGCTCCCGTTCGATCGAATCGACGCCTTCTCCTCCCAAATCGAATCGAAACCCTTGTCCTTCCCATGCCACTTTCAAGCCATTTTCATCGGTTTCGATTTCGATTTCAAGGTTTCGCACGACGATGTAGGAGCCGCGATCGCGAGGAAAATGTCGGACCTAAGTCACGGCGGCGGTTGCGGCGGATGTGGTGGTAATTACTCTGTTGCCGTGGCGGTGGACAGGGGAGACATTAATGCGTTTGATTTTGGCGAGAAGCTGAGAGGTAGTGACGAGGATGCTGATGAATTGGTGAAGAGTGTGGTGAGTGAGTATGGAGGAGGGAATGCGTATAGCGTTGTGGTGGTGAATGAAGAGGGGGAGGTGAGGAGTGTGGTGGGGAAGTATAGGCATGCGTGGATCGTGGGGCGGGTTGAGGAGGAGGAGGCAGTGTTGCATGTGGCTGAGGTTTTTGTTAAGGTTTTTGTTAATGGCGGGGACGTGGAGGGTTCAGTTCGCAGCGAGTTTATGCCTGTTGGTGCTGATGGGAGGATTGTTCTCTCTTTCAGTTTACTCAATGCAGACCCTCGAGATTGGATATATGATTGGAATTTTCGTGAAATTGATGAGACTTTGTTACGACCAGTGATTGAGGCTTTACAACCTATAGCAAACATCACTGTTGAAAGCCAGGTTTTGTACCATACACCAAAGTCTTCATTTTCTTACTGGGATGATAAGCATGGAAGCCACATGTTTAGAACCGAGGATCTTCCTTTCTTCGTGAATTCAAATGAGTGGCACTTGGATACTTCTGTTGCAGCAGGAGGAAGGTCAAAAGTATTGCAACTCGTGGTGTATATACCATCTGCAAAGGAGTGTCCACTTCAACTGGAGCTTCCAAATGGGGAGATCTCTAAAACTAACGGCTTTATATCTCCAATGTGGGGAGGTGTTGTTGTCTGGAATCCCCAAAGCTGTATAAAAGATTTTGAAAGTATGGATCCAGTTAGGCATACGATTTCTCCCCAGGATCTCCTGAAGCTTTTTGAGGTTCTCATGGGGCAGTTGCGGCAACTCCTTGGTCTGAAGTCAGATAACCTTTATGTTGGTGAGTCAGGCACATCTATTCTCCTAGGCAGTGAAAGAGGTTTCACAGAATGGTAA
>Glyma.18g166600.1.p sequence-type=predicted peptide transcript=Glyma.18g166600.1 locus=Glyma.18g166600 ID=Glyma.18g166600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAEISDSPSTSKSAEENTQTQTPESDLKTTRNTKPGVKRLIISVTVLFSFILGFPLLWKSIEIYRAPLPFDRIDAFSSQIESKPLSFPCHFQAIFIGFDFDFKVSHDDVGAAIARKMSDLSHGGGCGGCGGNYSVAVAVDRGDINAFDFGEKLRGSDEDADELVKSVVSEYGGGNAYSVVVVNEEGEVRSVVGKYRHAWIVGRVEEEEAVLHVAEVFVKVFVNGGDVEGSVRSEFMPVGADGRIVLSFSLLNADPRDWIYDWNFREIDETLLRPVIEALQPIANITVESQVLYHTPKSSFSYWDDKHGSHMFRTEDLPFFVNSNEWHLDTSVAAGGRSKVLQLVVYIPSAKECPLQLELPNGEISKTNGFISPMWGGVVVWNPQSCIKDFESMDPVRHTISPQDLLKLFEVLMGQLRQLLGLKSDNLYVGESGTSILLGSERGFTEWELDVLSRKHICFNLHSCATTLGSLSRLVQSLPRMIIMDEIGKQVKFSLEAAKFAQSNASIGIYNASAVSSRQSRSLAEDAFFHPSIMSISYYSFEHCFAIYSPFFLPVTMHVLLAALREWKRYKQENRKYLASKAKVKVS* >Glyma.18g166600.2.p sequence-type=predicted peptide transcript=Glyma.18g166600.2 locus=Glyma.18g166600 ID=Glyma.18g166600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAEISDSPSTSKSAEENTQTQTPESDLKTTRNTKPGVKRLIISVTVLFSFILGFPLLWKSIEIYRAPLPFDRIDAFSSQIESKPLSFPCHFQAIFIGFDFDFKVSHDDVGAAIARKMSDLSHGGGCGGCGGNYSVAVAVDRGDINAFDFGEKLRGSDEDADELVKSVVSEYGGGNAYSVVVVNEEGEVRSVVGKYRHAWIVGRVEEEEAVLHVAEVFVKVFVNGGDVEGSVRSEFMPVGADGRIVLSFSLLNADPRDWIYDWNFREIDETLLRPVIEALQPIANITVESQVLYHTPKSSFSYWDDKHGSHMFRTEDLPFFVNSNEWHLDTSVAAGGRSKVLQLVVYIPSAKECPLQLELPNGEISKTNGFISPMWGGVVVWNPQSCIKDFESMDPVRHTISPQDLLKLFEVLMGQLRQLLGLKSDNLYVGESGTSILLGSERGFTEW*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||