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Report for Sequence Feature Glyma.18g164100

Feature Type:gene_model
Chromosome:Gm18
Start:38115180
stop:38118852
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g164100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G06620.1AT 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein JGI N/AIEA
AT5G59540.1AT 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
GO:0016706GO-mf oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG0143 KOG Iron/ascorbate family oxidoreductases JGI N/AIEA
PTHR10209Panther OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEIN JGI N/AIEA
PTHR10209:SF55Panther JGI N/AIEA
PF03171PFAM 2OG-Fe(II) oxygenase superfamily JGI N/AIEA
GN7V-50778SoyCyc9-rxn deacetoxyvindoline 4-hydroxylase Plant Metabolic Network ISS

Expression Patterns of Glyma.18g164100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g164100
ParalogEvidenceComments
Glyma.08g351800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g164100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g35220 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g164100
>Glyma.18g164100.2 sequence-type=transcript locus=Glyma.18g164100 ID=Glyma.18g164100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATTGGCTTCCATTTGGATCTAATTATATAATCCCACGCTCTGCTTTAATACAAAAATTTGTGTTCGAGGTAGCCATTGATATTCTGCTAATGACTATGGTGTTCAAAAACACAAACCAGTTAGAGGAAAGTATGGATTCCACTTATGACAGGAAGGCTGAAGTGAAAGCCTTTGATGATTCAAAAGCTGGTGTTAAAGGTCTTGTAGAGTCTGGATTGACAAAGATCCCTCGCATGTTCCATTCTGGCAGGTTGGATATCATTGAAACCTCAGTCAGTGACTCTAAGTTCGGTATCCCCATCATAGACCTCCAAAATATCCACTCCTATCCTGCTCTGCATTCAGAAGTAATTGGCAAGGTTCGAAGTGCATGCCATGACTGGGGATTTTTCCAGGTGATTAATCATGGAATTCCTATCAGTGTGTTGGATGAGATGATTGAtggaattcgtagatttcatgaacaagacactaaggtaaggaaagagttctactctcgggatataaagaaaaaagtttcgtattattctaactataacttgtaccatgacaatcctgCTAATTGGAGAGATACATTTGGTTTTGTTGTTGCTCCTGATCCACCcaaacctgaagaaatatcatctgtgtgtagGGATATTGTGATTGAATATTCAAAGAAAATAAGGGATTTGGGTTTTACAATCTTTGAGTTGTTGTCTGAAGCTTTGGGACTTAATCCTTCTTACCTTAAAGAATTTAACTGTGGTGAAGGACTCTTTATTTTGGGTCACTACTATCCAACATGCCCTGAACCTGGATTAACTATGGGCACTACCAAGCACACAGATAGTAACTTCATGACTTTACTTCTACAAGACCAAATTGGTGGTCTTCAAGTTCTTCATCAAAATCAATGGGTCAATGTTCCTCCGTTACATGGAGCTCTTGTTGTAAACATAGGAGATCTTCTACAGGTAAAATACTCTGGAATAATTTTTGTCAAATTTTAGAGTATGCATTTTCTCTGTTATTTGTATTAAACATTAAGAATTCAGATACAATCGAAAAACAAAATAAATTTTAACAACCGGTTTTGTC
Coding sequences of Glyma.18g164100
>Glyma.18g164100.1 sequence-type=CDS polypeptide=Glyma.18g164100.1.p locus=Glyma.18g164100 ID=Glyma.18g164100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACTATGGTGTTCAAAAACACAAACCAGTTAGAGGAAAGTATGGATTCCACTTATGACAGGAAGGCTGAAGTGAAAGCCTTTGATGATTCAAAAGCTGGTGTTAAAGGTCTTGTAGAGTCTGGATTGACAAAGATCCCTCGCATGTTCCATTCTGGCAGGTTGGATATCATTGAAACCTCAGTCAGTGACTCTAAGTTCGGTATCCCCATCATAGACCTCCAAAATATCCACTCCTATCCTGCTCTGCATTCAGAAGTAATTGGCAAGGTTCGAAGTGCATGCCATGACTGGGGATTTTTCCAGGTGATTAATCATGGAATTCCTATCAGTGTGTTGGATGAGATGATTGATGGAATTCGTAGATTTCATGAACAAGACACTAAGGTAAGGAAAGAGTTCTACTCTCGGGATATAAAGAAAAAAGTTTCGTATTATTCTAACTATAACTTGTACCATGACAATCCTGCTAATTGGAGAGATACATTTGGTTTTGTTGTTGCTCCTGATCCACCCAAACCTGAAGAAATATCATCTGTGTGTAGGGATATTGTGATTGAATATTCAAAGAAAATAAGGGATTTGGGTTTTACAATCTTTGAGTTGTTGTCTGAAGCTTTGGGACTTAATCCTTCTTACCTTAAAGAATTTAACTGTGGTGAAGGACTCTTTATTTTGGGTCACTACTATCCAACATGCCCTGAACCTGGATTAACTATGGGCACTACCAAGCACACAGATAGTAACTTCATGACTTTACTTCTACAAGACCAAATTGGTGGTCTTCAAGTTCTTCATCAAAATCAATGGGTCAATGTTCCTCCGTTACATGGAGCTCTTGTTGTAAACATAGGAGATCTTCTACAGCTTATCACAAATGACAAGTTTGTCAGTGTGTATCACCGTGTCTTATCACAGAACACAGGCCCAAGAATATCTGTAGCAAGCTTCTTTGTAAATTCGCATGATCCAGCTGAGGGTACATCAAAGGTGTATGGTCCAATTAAGGAACTGCTTTCAGAAGAAAACCCACCAATCTACCGAGACACTACCTTAAAAGAGTTTTTGGCATATTATTATGCAAAGGGCCTTGATGGGAACTCTTCCTTGGGCCCCTTCAGGTTGTGA

>Glyma.18g164100.2 sequence-type=CDS polypeptide=Glyma.18g164100.2.p locus=Glyma.18g164100 ID=Glyma.18g164100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACTATGGTGTTCAAAAACACAAACCAGTTAGAGGAAAGTATGGATTCCACTTATGACAGGAAGGCTGAAGTGAAAGCCTTTGATGATTCAAAAGCTGGTGTTAAAGGTCTTGTAGAGTCTGGATTGACAAAGATCCCTCGCATGTTCCATTCTGGCAGGTTGGATATCATTGAAACCTCAGTCAGTGACTCTAAGTTCGGTATCCCCATCATAGACCTCCAAAATATCCACTCCTATCCTGCTCTGCATTCAGAAGTAATTGGCAAGGTTCGAAGTGCATGCCATGACTGGGGATTTTTCCAGGTGATTAATCATGGAATTCCTATCAGTGTGTTGGATGAGATGATTGATGGAATTCGTAGATTTCATGAACAAGACACTAAGGTAAGGAAAGAGTTCTACTCTCGGGATATAAAGAAAAAAGTTTCGTATTATTCTAACTATAACTTGTACCATGACAATCCTGCTAATTGGAGAGATACATTTGGTTTTGTTGTTGCTCCTGATCCACCCAAACCTGAAGAAATATCATCTGTGTGTAGGGATATTGTGATTGAATATTCAAAGAAAATAAGGGATTTGGGTTTTACAATCTTTGAGTTGTTGTCTGAAGCTTTGGGACTTAATCCTTCTTACCTTAAAGAATTTAACTGTGGTGAAGGACTCTTTATTTTGGGTCACTACTATCCAACATGCCCTGAACCTGGATTAACTATGGGCACTACCAAGCACACAGATAGTAACTTCATGACTTTACTTCTACAAGACCAAATTGGTGGTCTTCAAGTTCTTCATCAAAATCAATGGGTCAATGTTCCTCCGTTACATGGAGCTCTTGTTGTAAACATAGGAGATCTTCTACAGGTAAAATACTCTGGAATAATTTTTGTCAAATTTTAG
Predicted protein sequences of Glyma.18g164100
>Glyma.18g164100.1.p sequence-type=predicted peptide transcript=Glyma.18g164100.1 locus=Glyma.18g164100 ID=Glyma.18g164100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTMVFKNTNQLEESMDSTYDRKAEVKAFDDSKAGVKGLVESGLTKIPRMFHSGRLDIIETSVSDSKFGIPIIDLQNIHSYPALHSEVIGKVRSACHDWGFFQVINHGIPISVLDEMIDGIRRFHEQDTKVRKEFYSRDIKKKVSYYSNYNLYHDNPANWRDTFGFVVAPDPPKPEEISSVCRDIVIEYSKKIRDLGFTIFELLSEALGLNPSYLKEFNCGEGLFILGHYYPTCPEPGLTMGTTKHTDSNFMTLLLQDQIGGLQVLHQNQWVNVPPLHGALVVNIGDLLQLITNDKFVSVYHRVLSQNTGPRISVASFFVNSHDPAEGTSKVYGPIKELLSEENPPIYRDTTLKEFLAYYYAKGLDGNSSLGPFRL*

>Glyma.18g164100.2.p sequence-type=predicted peptide transcript=Glyma.18g164100.2 locus=Glyma.18g164100 ID=Glyma.18g164100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTMVFKNTNQLEESMDSTYDRKAEVKAFDDSKAGVKGLVESGLTKIPRMFHSGRLDIIETSVSDSKFGIPIIDLQNIHSYPALHSEVIGKVRSACHDWGFFQVINHGIPISVLDEMIDGIRRFHEQDTKVRKEFYSRDIKKKVSYYSNYNLYHDNPANWRDTFGFVVAPDPPKPEEISSVCRDIVIEYSKKIRDLGFTIFELLSEALGLNPSYLKEFNCGEGLFILGHYYPTCPEPGLTMGTTKHTDSNFMTLLLQDQIGGLQVLHQNQWVNVPPLHGALVVNIGDLLQVKYSGIIFVKF*






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