Glyma.18g158700

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Report for Sequence Feature Glyma.18g158700

Feature Type:	gene_model
Chromosome:	Gm18
Start:	35423900
stop:	35427143
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.18g158700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G13010.1	AT	Oxidoreductase, zinc-binding dehydrogenase family protein	JGI	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	JGI	N/A	IEA
GO:0008270	GO-mf	zinc ion binding	JGI	N/A	IEA
GO:0016491	GO-mf	oxidoreductase activity	EnsemblGenomes	N/A	IEA
GO:0016491	GO-mf	oxidoreductase activity	JGI	N/A	IEA
KOG1198	KOG	Zinc-binding oxidoreductase	JGI	N/A	IEA
PTHR11695	Panther	ALCOHOL DEHYDROGENASE RELATED	JGI	N/A	IEA
PTHR11695:SF34	Panther		JGI	N/A	IEA
PF00107	PFAM	Zinc-binding dehydrogenase	JGI	N/A	IEA
PF08240	PFAM	Alcohol dehydrogenase GroES-like domain	JGI	N/A	IEA
GN7V-41578	SoyCyc9-rxn	NADPH:quinone reductase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.18g158700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18g158700 not represented in the dataset	Glyma.18g158700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.18g158700

Paralog	Evidence	Comments
Glyma.08g347300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g158700 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma18g32900	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.18g158700

Limit To All Plant Sequences

>Glyma.18g158700.2 sequence-type=transcript locus=Glyma.18g158700 ID=Glyma.18g158700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTTCTTATTCACAAGTCAGCCTTAGAAACTCATGCATGCGGTTCAGTATGATAGCTACGGTGGAGGACCTGCTGGCTTAAAGCATGTTGAAGTTCCCATACCTACTCCCAGCAAAGATGAGGTTTTGATTAAGGTTGAAGCAGCTAGTATAAATCCATTTGATTGGAAAGTACAGAAACGCATGTTGTGGCCACTTTTGCCTCGCAAGTTCCCACATATACCTGGCACTGATATAACTGGAGAGGTCACAGAGGTTGGTCAAGGTGTCCAAAAGTTCAAACCTGGTGACAAAGTGGTAGCCATTGTTAACCCATTTAATGGCGGAGGACTGGCTGAGTTTGCGGTTGCTAAGGAGAGTGTCACTGCATCAAGACCATCAGAAACCTCAGCATCTGAATGTGCTGCCCTACCTGTAGCAGGTCTGACAGCTCTTCAAGCTCTCACCAAATCCATAGGGATAAAACTTGATGGGAGTGGTGAAAGGAAAAGCATTTTGGTCACTGCCGCATCAGGTGGTGTTGGTCACTATGCTGTCCAACTGGCAAAGCTAGGAAACACTCATGTGACAGCAACATGTGGAGCTCGCAATATTGAATTGGTGAAAAGTTTAGGGGCTGATGAGGTAATTGACTATAAGACCCCAGATGGCGCTGCTTTGAAGAGTCCATCTGGTAAGAAATATGATGCTGTGATTCACTGTGCAATGGGCTTTCCATGGTCCACCTTTGAGCCTAACTTGACCGTGACTGGAAAGGTTGTAGACATAACTCCAAGCTCTGCTTCAATGCTGACATTTGCTCTGAAAAAACTTACCTTCTCCAAAAAGCAACTTGTGCCTTTGCTTTTATTTCCTAAAGGTGAGGACCTTCAACATCTTATTCATTTAGTCAAGGAAGGAAAGCTTAAAACAGTTGTGGACTCCAAATATCCTCTAACCAAGGCTGAAGATGCCTGGGCTAAGAGTATTACTGGCCATGCAACTGGGAAGATAATTATTGAGTTCTAGATATGCATAGTATGTGAATTGATTCAGGAATACCTTGCAGTTTTACTTTGGTATGACATGAGACGAATATCATTTGTTGTGTCCCTACATACTGTAACAATTGAATTGGTCTGAATCCATTTGGAAAGAATCATGTTATGTACTGATTAGTGATGGTGAAGAAATATTCCGGAAAGGATGAACTACTTTGATTTTGGTTAGGCTTTGTTTGAGTGTTTATA

Coding sequences of Glyma.18g158700

Limit To All Plant Sequences

>Glyma.18g158700.1 sequence-type=CDS polypeptide=Glyma.18g158700.1.p locus=Glyma.18g158700 ID=Glyma.18g158700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGAAGAAACTCATGCATGCGGTTCAGTATGATAGCTACGGTGGAGGACCTGCTGGCTTAAAGCATGTTGAAGTTCCCATACCTACTCCCAGCAAAGATGAGGTTTTGATTAAGGTTGAAGCAGCTAGTATAAATCCATTTGATTGGAAAGTACAGAAACGCATGTTGTGGCCACTTTTGCCTCGCAAGTTCCCACATATACCTGGCACTGATATAACTGGAGAGGTCACAGAGGTTGGTCAAGGTGTCCAAAAGTTCAAACCTGGTGACAAAGTGGTAGCCATTGTTAACCCATTTAATGGCGGAGGACTGGCTGAGTTTGCGGTTGCTAAGGAGAGTGTCACTGCATCAAGACCATCAGAAACCTCAGCATCTGAATGTGCTGCCCTACCTGTAGCAGGTCTGACAGCTCTTCAAGCTCTCACCAAATCCATAGGGATAAAACTTGATGGGAGTGGTGAAAGGAAAAGCATTTTGGTCACTGCCGCATCAGGTGGTGTTGGTCACTATGCTGTCCAACTGGCAAAGCTAGGAAACACTCATGTGACAGCAACATGTGGAGCTCGCAATATTGAATTGGTGAAAAGTTTAGGGGCTGATGAGGTAATTGACTATAAGACCCCAGATGGCGCTGCTTTGAAGAGTCCATCTGGTAAGAAATATGATGCTGTGATTCACTGTGCAATGGGCTTTCCATGGTCCACCTTTGAGCCTAACTTGACCGTGACTGGAAAGGTTGTAGACATAACTCCAAGCTCTGCTTCAATGCTGACATTTGCTCTGAAAAAACTTACCTTCTCCAAAAAGCAACTTGTGCCTTTGCTTTTATTTCCTAAAGGTGAGGACCTTCAACATCTTATTCATTTAGTCAAGGAAGGAAAGCTTAAAACAGTTGTGGACTCCAAATATCCTCTAACCAAGGCTGAAGATGCCTGGGCTAAGAGTATTACTGGCCATGCAACTGGGAAGATAATTATTGAGTTCTAG

>Glyma.18g158700.2 sequence-type=CDS polypeptide=Glyma.18g158700.2.p locus=Glyma.18g158700 ID=Glyma.18g158700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCATGCGGTTCAGTATGATAGCTACGGTGGAGGACCTGCTGGCTTAAAGCATGTTGAAGTTCCCATACCTACTCCCAGCAAAGATGAGGTTTTGATTAAGGTTGAAGCAGCTAGTATAAATCCATTTGATTGGAAAGTACAGAAACGCATGTTGTGGCCACTTTTGCCTCGCAAGTTCCCACATATACCTGGCACTGATATAACTGGAGAGGTCACAGAGGTTGGTCAAGGTGTCCAAAAGTTCAAACCTGGTGACAAAGTGGTAGCCATTGTTAACCCATTTAATGGCGGAGGACTGGCTGAGTTTGCGGTTGCTAAGGAGAGTGTCACTGCATCAAGACCATCAGAAACCTCAGCATCTGAATGTGCTGCCCTACCTGTAGCAGGTCTGACAGCTCTTCAAGCTCTCACCAAATCCATAGGGATAAAACTTGATGGGAGTGGTGAAAGGAAAAGCATTTTGGTCACTGCCGCATCAGGTGGTGTTGGTCACTATGCTGTCCAACTGGCAAAGCTAGGAAACACTCATGTGACAGCAACATGTGGAGCTCGCAATATTGAATTGGTGAAAAGTTTAGGGGCTGATGAGGTAATTGACTATAAGACCCCAGATGGCGCTGCTTTGAAGAGTCCATCTGGTAAGAAATATGATGCTGTGATTCACTGTGCAATGGGCTTTCCATGGTCCACCTTTGAGCCTAACTTGACCGTGACTGGAAAGGTTGTAGACATAACTCCAAGCTCTGCTTCAATGCTGACATTTGCTCTGAAAAAACTTACCTTCTCCAAAAAGCAACTTGTGCCTTTGCTTTTATTTCCTAAAGGTGAGGACCTTCAACATCTTATTCATTTAGTCAAGGAAGGAAAGCTTAAAACAGTTGTGGACTCCAAATATCCTCTAACCAAGGCTGAAGATGCCTGGGCTAAGAGTATTACTGGCCATGCAACTGGGAAGATAATTATTGAGTTCTAG

Predicted protein sequences of Glyma.18g158700

Limit To All Plant Sequences

>Glyma.18g158700.1.p sequence-type=predicted peptide transcript=Glyma.18g158700.1 locus=Glyma.18g158700 ID=Glyma.18g158700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGKKLMHAVQYDSYGGGPAGLKHVEVPIPTPSKDEVLIKVEAASINPFDWKVQKRMLWPLLPRKFPHIPGTDITGEVTEVGQGVQKFKPGDKVVAIVNPFNGGGLAEFAVAKESVTASRPSETSASECAALPVAGLTALQALTKSIGIKLDGSGERKSILVTAASGGVGHYAVQLAKLGNTHVTATCGARNIELVKSLGADEVIDYKTPDGAALKSPSGKKYDAVIHCAMGFPWSTFEPNLTVTGKVVDITPSSASMLTFALKKLTFSKKQLVPLLLFPKGEDLQHLIHLVKEGKLKTVVDSKYPLTKAEDAWAKSITGHATGKIIIEF*

>Glyma.18g158700.2.p sequence-type=predicted peptide transcript=Glyma.18g158700.2 locus=Glyma.18g158700 ID=Glyma.18g158700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MHAVQYDSYGGGPAGLKHVEVPIPTPSKDEVLIKVEAASINPFDWKVQKRMLWPLLPRKFPHIPGTDITGEVTEVGQGVQKFKPGDKVVAIVNPFNGGGLAEFAVAKESVTASRPSETSASECAALPVAGLTALQALTKSIGIKLDGSGERKSILVTAASGGVGHYAVQLAKLGNTHVTATCGARNIELVKSLGADEVIDYKTPDGAALKSPSGKKYDAVIHCAMGFPWSTFEPNLTVTGKVVDITPSSASMLTFALKKLTFSKKQLVPLLLFPKGEDLQHLIHLVKEGKLKTVVDSKYPLTKAEDAWAKSITGHATGKIIIEF*

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