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Report for Sequence Feature Glyma.18g157400

Feature Type:gene_model
Chromosome:Gm18
Start:35123107
stop:35126732
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g157400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G27120.1AT DNA polymerase epsilon catalytic subunit JGI N/AIEA
GO:0000278GO-bp mitotic cell cycle EnsemblGenomesN/AIEA
GO:0006260GO-bp DNA replication EnsemblGenomesN/AIEA
GO:0006260GO-bp DNA replication JGI N/AIEA
GO:0006272GO-bp leading strand elongation EnsemblGenomesN/AIEA
GO:0006281GO-bp DNA repair EnsemblGenomesN/AIEA
GO:0006287GO-bp base-excision repair, gap-filling EnsemblGenomesN/AIEA
GO:0006297GO-bp nucleotide-excision repair, DNA gap filling EnsemblGenomesN/AIEA
GO:0045004GO-bp DNA replication proofreading EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0071897GO-bp DNA biosynthetic process EnsemblGenomesN/AIEA
GO:0090305GO-bp nucleic acid phosphodiester bond hydrolysis EnsemblGenomesN/AIEA
GO:0008622GO-cc epsilon DNA polymerase complex EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding JGI N/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0003887GO-mf DNA-directed DNA polymerase activity EnsemblGenomesN/AIEA
GO:0003887GO-mf DNA-directed DNA polymerase activity JGI N/AIEA
GO:0005507GO-mf copper ion binding EnsemblGenomesN/AIEA
GO:0005507GO-mf copper ion binding JGI N/AIEA
GO:0008310GO-mf single-stranded DNA 3'-5' exodeoxyribonuclease activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
PTHR10670Panther DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A JGI N/AIEA
PF00136PFAM DNA polymerase family B JGI N/AIEA
PF07731PFAM Multicopper oxidase JGI N/AIEA

Expression Patterns of Glyma.18g157400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18g157400 not represented in the dataset
Glyma.18g157400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.18g157400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g32696 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g157400
>Glyma.18g157400.1 sequence-type=CDS polypeptide=Glyma.18g157400.1.p locus=Glyma.18g157400 ID=Glyma.18g157400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTCCATGTAACAAATGTGACAATAATTGAAACTTTCATTCTAAATGCATCAACAGCAACTATTGATGGGTTATCTCGCTACTCTGTCAACAATGTGTCTTACTTGATCCCAGATATACCACTGAAACTAGCTTATTTCTTTTCCAATAGAACTGGTGTATATGAACTTGATGCTTTTTCTAAGAACACTTCAAATGCTAACGCCGTGCGTGGAGTTTTCGTATCTAGTGCATTACTTAAAGGTTGGACTGAGATAGTGCTAGAAAACAATTTAGACATCATTGATACTTGGCATTTGGATGGATATAGCTTCTTTGTTGTTGGGTATAATGTGAGTTTCCGGGATAGAAGATATGAATATAAAGGTCTCAATAAGGTTTGGAAGGGAAAATTGTCAGAGGCCAAGGCTAGTGGAAATTCTATAAAGATCCAGGAAGCACAGGATATGGTTGTGCTTTATGATTCATTGCAAATTGCTCACAAGTGTATACTTAATTCCTTTTATGGATATGTCATGCGCAAGGGTGCAAGATGGTACTCCATGGAAATGGCTGGAGTAGTGACATATACTGGTGCAAATATCATTCAGAATGCTCGCTTGCTAGTAGAGAAAATAGGAAAACCACTTGAACTAGACACTGATGGTATCTGGTGTGCACTACCTGGATCTTTTCCAGAAAATTTCACTTTTAAAACAAGAGACCCAAAGAAGAAGTTTACAATCTCATACCCATGTGTTATGCTTAATGTTGATGTGGCAATAAATAACTCAAATGATCAATACCAGACACTCACAGATCCAATCAGGAAAACGTATACAACTCGCAGTGAATGCTCTATCGAATTTTAG
Predicted protein sequences of Glyma.18g157400
>Glyma.18g157400.1.p sequence-type=predicted peptide transcript=Glyma.18g157400.1 locus=Glyma.18g157400 ID=Glyma.18g157400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFHVTNVTIIETFILNASTATIDGLSRYSVNNVSYLIPDIPLKLAYFFSNRTGVYELDAFSKNTSNANAVRGVFVSSALLKGWTEIVLENNLDIIDTWHLDGYSFFVVGYNVSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQIAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGANIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTRDPKKKFTISYPCVMLNVDVAINNSNDQYQTLTDPIRKTYTTRSECSIEF*






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