SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G15560.1 | AT | Deoxyxylulose-5-phosphate synthase | JGI | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:0016114 | GO-bp | terpenoid biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0016114 | GO-bp | terpenoid biosynthetic process | JGI | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | JGI | N/A | IEA |
| GO:0008661 | GO-mf | 1-deoxy-D-xylulose-5-phosphate synthase activity | EnsemblGenomes | N/A | IEA |
| GO:0008661 | GO-mf | 1-deoxy-D-xylulose-5-phosphate synthase activity | JGI | N/A | IEA |
| GO:0016624 | GO-mf | oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor | JGI | N/A | IEA |
| KOG0523 | KOG | Transketolase | JGI | N/A | IEA |
| PTHR11624 | Panther | DEHYDROGENASE RELATED | JGI | N/A | IEA |
| PTHR11624:SF20 | Panther | SUBFAMILY NOT NAMED | JGI | N/A | IEA |
| PF00676 | PFAM | Dehydrogenase E1 component | JGI | N/A | IEA |
| PF02779 | PFAM | Transketolase, pyrimidine binding domain | JGI | N/A | IEA |
| PF02780 | PFAM | Transketolase, C-terminal domain | JGI | N/A | IEA |
| NONMEVIPP-PWY | SoyCyc9 | methylerythritol phosphate pathway I | Plant Metabolic Network | ISS | |
| PWY-5121 | SoyCyc9 | superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) | Plant Metabolic Network | ISS | |
| PWY-7560 | SoyCyc9 | methylerythritol phosphate pathway II | Plant Metabolic Network | ISS | |
| GN7V-48057 | SoyCyc9-rxn | 1-deoxy-D-xylulose-5-phosphate synthase | Plant Metabolic Network | ISS |
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| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma18g28830 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.18g148700.1 sequence-type=CDS polypeptide=Glyma.18g148700.1.p locus=Glyma.18g148700 ID=Glyma.18g148700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCCTTCTGTGGTGGAACTTTTGTTAAGCTAAACTATTCTGTGTCCCCATGCCACAAATACAAAGCTCCAAGTCCATACCATAGCTACAGAAACAAGTTCTGTGTGAGAGTTTCAGCAAGTGGCTCAGCTGATGAGGAGAGGACTATTATAAAGAAAGAGAAAGATGGGTGGAAGATCAATTATGCAGGAGAGAAACCAGCAACTCTATTGTTGGACACAATCAACTACCCAATTCACATGAAGAATCTGTCAACACAGGATCTGGAGCAACTTGCAGCAGAGCTGAGGGCAGATATTGTACACACTGTGTCAAACACTGGTGGGCATCTTAGCTCAAGCTTGGGAGTGGTGGAGTTAGCAGTGGCTTTGCATCATGTTTTCAACACACCTGAAGACAAAATTATATGGGATGTTGGCCATCAGGCATACCCACACAAGATTCTCACAGGTAGAAGGTCAAGGATGCACACCATTAGGAAGACTTCAGGGCTAGCAGGCTTTCCTAAAAGGGATGAGAGTATTCATGATGCTTTTGGGGTAGGACACAGTTCTACAAGCATATCTGCTGGTCTTGGCATGGCTGTTGCACGAGATCTATTGGGAAAGAACAACAGCATCATTTCAGTGATTGGAGATGGGGCATTGACAGCAGGCCAAGCATATGAGGCCATGAACAATGCAGGGTTCCTTGATTCTAACATGATAGTTGTACTTAATGACAATAAACAAGTCTCTTTACCAACTGCCACACTTGATGGGCCTGCATCTCCAGTCGGAGCCCTCAGTAGTGCCTTAAGCAAAATTCAAGCAAGTGCTGAATTCCGCAAACTCAGAGAAGCTGCAAAAAGCATCACAAAGCAAATAGGAAAACAAACACACCAGGTTGCAGCAAAAGTAGATGAGTATGCAAGAGGTATTATAAGTGGTTCAGCCTGTACATTTTTTGAAGAGCTTGGCCTATACTACATAGGTCCTGTGGATGGTCATAAAATTGAAGATCTGGTCACCATCTTTGAAAAGGTGAAAGCAATGCCTGCCCCAGGTCCAGTTCTGATTCACTGTGTCACAGAAAAAGGCAAGGGATATCCCCCAGCAGAAAAAGCATCTGATAAAATGCACGGGGTTGTCAAATTTGACCCAAAAACAGGCGAGCAGTTTAAGGCAAAATCCTCTACACTTTCATACACCCAATACTTTGCTGAGTCTTTGATAAAGGAGGCTGAAAATGACAAGAAGATAGTGGCCATTCACGCAGCAATGGGTGGTGGAACCGGCTTAAATTATTTCCATAAAAGGTTTCCCGAGCGCTGTTTCGATGTGGGGATAGCTGAACAACATGCTGTAACATTTGCAGCTGGTTTAGCTGCGGAAGGGCTCAAGCCATTTTGTGCCATTTATTCATCATTCTTGCAACGCGGATATGATCAGGTAGTCCATGATGTTGATCTTCAAAAGCTACCTGTCCGATTTGCTTTGGATAGGGCTGGTTTAGTTGGAGCAGATGGACCAACCCATTGTGGAGCATTTGATATCACTTACATGGCATGCCTACCCAACATGGTGGTTATGGCTCCTTCTGATGAAGCTGAACTGATGCACATGGTTGCGACCGCAGCAGCTATAGATGATAGACCAAGCTGCTTTAGATTTCCAAGGGGAAACGGAATCGGAGCCACTCTGCCACTAAATAACAAAGGAACCCCACTTGAGATCGGAAAAGGTAGAATTCTGGTAGAAGGCAGCAGAATTGCCATTTTGGGATATGGTTCTGTGGTCCAACAATGCAGGCAAGCCTCAGAAATGCTTAAAGAACTCGGCGTTGATGTGACAGTTGCCGATGCTAGATTTTGCAAACCTCTGGATACTGGTCTCATTAGGCTATTAGCTAAAGAGCATGAAATACTCATCACAGTGGAAGAGGGTTCTATTGGTGGTTTTGGATCGCATGTTTCACAATTCTTGAGCTTATCTGGTATCCTAGATGGACCTCTAAAGTGGAGAGCAATGATGCTTCCTGATAGGTACATTGAGCATGGATCACCCCAAGCTCAGGTTGAAGATGCAGGGCTTTCATCAAAGCACATTGCAGCCACAGTCTTGTCTCTTATGGAAAGGCCAAAACAAGCTCTTCTGTTCAAATAA
>Glyma.18g148700.1.p sequence-type=predicted peptide transcript=Glyma.18g148700.1 locus=Glyma.18g148700 ID=Glyma.18g148700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAFCGGTFVKLNYSVSPCHKYKAPSPYHSYRNKFCVRVSASGSADEERTIIKKEKDGWKINYAGEKPATLLLDTINYPIHMKNLSTQDLEQLAAELRADIVHTVSNTGGHLSSSLGVVELAVALHHVFNTPEDKIIWDVGHQAYPHKILTGRRSRMHTIRKTSGLAGFPKRDESIHDAFGVGHSSTSISAGLGMAVARDLLGKNNSIISVIGDGALTAGQAYEAMNNAGFLDSNMIVVLNDNKQVSLPTATLDGPASPVGALSSALSKIQASAEFRKLREAAKSITKQIGKQTHQVAAKVDEYARGIISGSACTFFEELGLYYIGPVDGHKIEDLVTIFEKVKAMPAPGPVLIHCVTEKGKGYPPAEKASDKMHGVVKFDPKTGEQFKAKSSTLSYTQYFAESLIKEAENDKKIVAIHAAMGGGTGLNYFHKRFPERCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFALDRAGLVGADGPTHCGAFDITYMACLPNMVVMAPSDEAELMHMVATAAAIDDRPSCFRFPRGNGIGATLPLNNKGTPLEIGKGRILVEGSRIAILGYGSVVQQCRQASEMLKELGVDVTVADARFCKPLDTGLIRLLAKEHEILITVEEGSIGGFGSHVSQFLSLSGILDGPLKWRAMMLPDRYIEHGSPQAQVEDAGLSSKHIAATVLSLMERPKQALLFK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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