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Report for Sequence Feature Glyma.18g139100

Feature Type:gene_model
Chromosome:Gm18
Start:20820169
stop:20828364
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g139100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G32180.2AT pantothenate kinase 2 JGI N/AIEA
GO:0015937GO-bp coenzyme A biosynthetic process EnsemblGenomesN/AIEA
GO:0015937GO-bp coenzyme A biosynthetic process JGI N/AIEA
GO:0016310GO-bp phosphorylation EnsemblGenomesN/AIEA
GO:0004594GO-mf pantothenate kinase activity EnsemblGenomesN/AIEA
GO:0004594GO-mf pantothenate kinase activity JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
KOG2201 KOG Pantothenate kinase PanK and related proteins JGI N/AIEA
PTHR12280Panther PANTOTHENATE KINASE JGI N/AIEA
PTHR12280:SF10Panther JGI N/AIEA
PF03630PFAM Fumble JGI N/AIEA
PANTO-PWYSoyCyc9 phosphopantothenate biosynthesis I Plant Metabolic Network ISS
GN7V-48430SoyCyc9-rxn pantothenate kinase Plant Metabolic Network ISS

Expression Patterns of Glyma.18g139100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g139100
ParalogEvidenceComments
Glyma.08g285700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g139100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g19360 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g139100
>Glyma.18g139100.1 sequence-type=CDS polypeptide=Glyma.18g139100.1.p locus=Glyma.18g139100 ID=Glyma.18g139100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCTCAGAGAGGGTCAAACTCAACCAATTTTGGATCCTAACCAACCCTCTCATGTATATCATCTGGCTTTGGATATTGGAGGATCTCTTGCCAAGTTAGTATACTTCACAAAAGATGATGATCATTTGGTTGATGGCGAGGAGGGAATATCTCATAGAAAGGCTTTTGAAAAATCCAATGGCAGTAAGCAATATCCTGTTCTAAATGGGAGGCTCAATTTTAAGAAATTTGAAACAAGCAAGATAAATGATTGTATAGAGTTTATCAAGTCCATGAAACTTCACATTGGAGGTAGTCAGCCACAAGAAAATCCTGGAAGTCAGTCAATAGCTATTAAGGCCACAGGTGGTGGGGCGTACAAATATGCAGACCTTTTCAAGGAAAGACTGGGAATCATTTTTGACAAGGAAGATGAAATGGATTGTCTTGTTGCAGGAGCAAATTTTCTTCTTGAGGTGGTTCACCAGGAAGCATTTACCTATATGGGTGATCAAAAGCAATTTGTGCAGATTGATCAGAATGATCTGTATCCCTATCTTCTTGTTAATATTGGATCTGGTGTTGGCATGATTAAGGTGGAAGGAGAGGGAAAATTTGAGCGAGTTAGTGGAACAAGTATAGGCGGAGGCACTTTCTGGGGTTTAGGAAAGCTTTTAACTGAATGCAAGAGTTTTGATGAGCTGCTGGATTTAAGTTATCGGGGGAACAATAGAGCGGTAGATATGCTTGTTGGAGATATTTATGGTGGAATGGACTATTCAAAGATAGGTCTTTCATCCACTGCAATAGCTTCTAGTTTTGGAAAGGCAATTTCTGATAATAAGGAGCGTGAAGATTACAAACCTGAAGATATTGCTCGATCTCTTCTAAGAATGATCTCAAATAATATTGGACAGATCTCTTACTTAAATGCCCTTCGCTTTGGGATGAAGAGGATTTTTTTTGGTGGATTTTTTATTCGGAGGCACCCTTTTACTATGGACACATTATCTGTTGCTGTTAATTTCTGGTCTAAAGGTGAGGCTAAGGCAATGTTTTTGCGGCATGAAGGGTTTCTAGGAGGTGTAGGCGCTTTCATGAGTTCTGACAAACATGGCCTCAAGGAATTATTGGCCCATCAAGTGGTGCAAAGAAGTCTCAGCAAGTTATCCTTTGCCGTGGATAAAATATTGCATGGTTCACCAGATGGAGACTTTAATGGAGATGAAAGTATAGAGTGCAGTGTATATGCAGCTTAG
Predicted protein sequences of Glyma.18g139100
>Glyma.18g139100.1.p sequence-type=predicted peptide transcript=Glyma.18g139100.1 locus=Glyma.18g139100 ID=Glyma.18g139100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDLREGQTQPILDPNQPSHVYHLALDIGGSLAKLVYFTKDDDHLVDGEEGISHRKAFEKSNGSKQYPVLNGRLNFKKFETSKINDCIEFIKSMKLHIGGSQPQENPGSQSIAIKATGGGAYKYADLFKERLGIIFDKEDEMDCLVAGANFLLEVVHQEAFTYMGDQKQFVQIDQNDLYPYLLVNIGSGVGMIKVEGEGKFERVSGTSIGGGTFWGLGKLLTECKSFDELLDLSYRGNNRAVDMLVGDIYGGMDYSKIGLSSTAIASSFGKAISDNKEREDYKPEDIARSLLRMISNNIGQISYLNALRFGMKRIFFGGFFIRRHPFTMDTLSVAVNFWSKGEAKAMFLRHEGFLGGVGAFMSSDKHGLKELLAHQVVQRSLSKLSFAVDKILHGSPDGDFNGDESIECSVYAA*






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