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Report for Sequence Feature Glyma.18g138900

Feature Type:gene_model
Chromosome:Gm18
Start:20776568
stop:20779100
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g138900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G60820.1AT N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein JGI N/AIEA
GO:0006508GO-bp proteolysis EnsemblGenomesN/AIEA
GO:0051603GO-bp proteolysis involved in cellular protein catabolic process EnsemblGenomesN/AIEA
GO:0051603GO-bp proteolysis involved in cellular protein catabolic process JGI N/AIEA
GO:0000502GO-cc proteasome complex EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005839GO-cc proteasome core complex EnsemblGenomesN/AIEA
GO:0005839GO-cc proteasome core complex JGI N/AIEA
GO:0004175GO-mf endopeptidase activity EnsemblGenomesN/AIEA
GO:0004298GO-mf threonine-type endopeptidase activity EnsemblGenomesN/AIEA
GO:0004298GO-mf threonine-type endopeptidase activity JGI N/AIEA
GO:0008233GO-mf peptidase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
KOG0179 KOG 20S proteasome, regulatory subunit beta type PSMB1/PRE7 JGI N/AIEA
PTHR11599Panther PROTEASOME SUBUNIT ALPHA/BETA JGI N/AIEA
PTHR11599:SF8Panther JGI N/AIEA
PF00227PFAM Proteasome subunit JGI N/AIEA

Expression Patterns of Glyma.18g138900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18g138900 not represented in the dataset
Glyma.18g138900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g138900
ParalogEvidenceComments
Glyma.08g286200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g138900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g19225 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g138900
>Glyma.18g138900.1 sequence-type=CDS polypeptide=Glyma.18g138900.1.p locus=Glyma.18g138900 ID=Glyma.18g138900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACTAAGCAACAAGCTAATTGGTCTCCATACGATAACAACGGAGGATCATGTGTTGCAATTGCTGGAGCAGATTACTGCGTCATCGCCGCGGATACGAGGATGTCCACCGGTTACAATATCCTCACTCGCGATTACTCCAAAATCTCCCAACTGGCGGAGAAGTGTGTTATGGCTTCTTCTGGTTTTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTGATTTATCAGCATCAACACAACAAACAAATGAGCTGCCCTGCGATGGCTCAGTTGCTCTCAAACACTCTTTATTACAAACGCTTCTTTCCTTATTATGCTTTCAATGTTTTGGGTGGCCTTGACAATGAAGGAAAGGGATGTGTCTTCACATATGATGCTGTTGGTTCCTATGAGAGGGTTGGATATAGCTCTCAGGGTTCTGGATCCACACTTATTATGCCATTTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCGCAGGATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACTGGAGATAAGGTTGAAATCGTCGTCCTAAATGCCAGTGGTATTCGTCGTGAATACATGGACCTAAGGAAAGATTAA
Predicted protein sequences of Glyma.18g138900
>Glyma.18g138900.1.p sequence-type=predicted peptide transcript=Glyma.18g138900.1 locus=Glyma.18g138900 ID=Glyma.18g138900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTKQQANWSPYDNNGGSCVAIAGADYCVIAADTRMSTGYNILTRDYSKISQLAEKCVMASSGFQADVKALQKVLSARHLIYQHQHNKQMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDNEGKGCVFTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTVFASATERDIYTGDKVEIVVLNASGIRREYMDLRKD*






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