Glyma.18g133100

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Report for Sequence Feature Glyma.18g133100

Feature Type:	gene_model
Chromosome:	Gm18
Start:	18870134
stop:	18874817
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.18g133100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G70210.1	AT	CYCLIN D1;1	JGI	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	JGI	N/A	IEA
KOG0656	KOG	G1/S-specific cyclin D	JGI	N/A	IEA
PTHR10177	Panther	CYCLINE	JGI	N/A	IEA
PTHR10177:SF76	Panther		JGI	N/A	IEA
PF00134	PFAM	Cyclin, N-terminal domain	JGI	N/A	IEA
PF02984	PFAM	Cyclin, C-terminal domain	JGI	N/A	IEA

Expression Patterns of Glyma.18g133100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.18g133100

Paralog	Evidence	Comments
Glyma.08g291000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g133100 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma18g17810	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.18g133100

Limit To All Plant Sequences

>Glyma.18g133100.2 sequence-type=transcript locus=Glyma.18g133100 ID=Glyma.18g133100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAACAGACAGAAGCACGCATATTTATAGTCACACAATCAGATGCAGAAGAGCCTTCAAACCAAGACAACGATATCAGTCTTCCATTCATCAACAACCACTCTCTCTCCCCTCTCTGCAGCAAAACCAATTCTCCGGCGACATCTCCGGTCAGGTTCCGGCAGCCTCTCCGGCGACTCGGCATGGCAACTCAATGAATGCGGAATCACCGCCGGGGCTCCTCATGTCGGTTTCCTGCCTCTCCGACTACGACCTCCTCTGCGGCGAGGACTCCTCCGGAATCCTCTCCGGAGAGTCGCCGGAGTGCTCCTTCTCCGACATCGACTCCTCACCTCCTCCGCCGTCGCCGACGACAGAGGATTGTTATTCGATCGCGAGCTTCATCGAGCACGAGCGCAACTTCGTTCCGGGATTCGAGTACCTGTCGCGGTTCCAATCTCGCTCCCTGGACGCCAACGCCAGAGAAGAATCAGTTGGATGGATTCTCAAGGTACACGCGTACTATGGCTTTCAGCCTTTGACGGCGTACCTCGCCGTCAACTATATGGATCGGTTTTTGGATTCTCGCCGGTTGCCGGAAACAAATGGGTGGCCTCTGCAACTTGTATCTGTTGCATGCTTGTCTTTGGCAGCAAAGATGGAAGAACCTCTTGTTCCATCTCTCTTGGACCTTCAGATAGAAGGTGCCAAGTACATATTTGAGCCGAGAACAATTCGTAGGATGGAGCTACTTGTTCTCGGTGTCTTAGATTGGAGGCTAAGATCAGTAACACCACTTTGCTTCCTCGCTTTCTTTGCGTGCAAAGTAGATTCAACTGGAACTTTTATCCGGTTCCTTATTTCCAGGGCAACAGAAATCATCGTATCTAATATCCAAGAGGCTAGCTTTCTTGCTTACTGGCCTTCATGCATTGCTGCTGCAGCCATACTCACTGCAGCTAATGAAATTCCTAATTGGTCTGTGGTTAAGCCCGAAAATGCTGAGTCATGGTGCGAGGGACTAAGAAAAGAAAAAGTAATAGGGTGCTACCAGTTGATGCAAGAGCTTGTGATTAACAATAACCAACGGAAACTCCCTACTAAAGTGTTGCCGCAGCTGCGAGTAACAACTCGGACCCGAATGAGGTCAAGTACTGTATCATCATTCTCATCATCCTCTTCAACCTCCTTCTCCTTGTCTTGTAAGAGGAGGAAATTAAATAACCGTTTGTGGGTAGATGACAAAGGAAACTCCGAGTgaagagaaaacgaacaacaataataaaagaagggaagaaaaagaGAGGGAATAAGAATTCACCTAGGGAAGAGGGATTTTGCGACATGTTACCGTGGGAGAGGAAATGAGAGAAGAAAGAAGTGAAACACTGAAACAGGGGTAGAAGAATTTAATGTGATTTGTTCTTGTAACCTGTGAGTGTGGAAGAAAGAAGTGAGTTGCGGGCTGGAATTCAAAGTTTGCATTAATTATTGGTGAAGGAGATGAAAGATGGTGGGGGCAACGCTGTAGAGATTGAGAAGAAGAAAAAGTAGAGAGAAGGTATGAAAAACTCTGGTGATTAttgaaagttgaaacttagaagtttgaagtgttcaatgttCATATCATGGTATTCATAAGTCAAGCAAAGCTTCATTTCTTGGCCAGCATCACTGCTTCTTCATCATCCACGTTACTACTACTTTGATGGGACCCTCAACAGTAAAGAACAATTGAAGGGCAATAAGTTGAAGTTTGGCTACAAATCGTGGACTTTTTTTGTTGGGTATTGGCACGTGTGCAGTCGGTTCTGGTGCGTGCCAATGAAGTGTGTACGTGTGATTTTTCTTTTTCTTGGTTTTTCTTTGCGGGAGCTGTTTATATATTTTTTCCTATTTTTGGCCATGAGTTTTGGCCTAACTATACAGGACTCCAATGGCTGGTGTCCGCGCGTGTGATGGAAACACGTGTATATATAGGTTTTAATTTAAAAACCTTGAATTTTTTTATTTGTTTTCAAGAGAGGAGAACCCTCTTTCACATAGGGGTAAAAGGTCTTTGGGGCCTTTTTCCTGTGTGCTGTGTATTGGATTGATTAATATATAATGACAACTATTAATTTCTT

Coding sequences of Glyma.18g133100

Limit To All Plant Sequences

>Glyma.18g133100.1 sequence-type=CDS polypeptide=Glyma.18g133100.1.p locus=Glyma.18g133100 ID=Glyma.18g133100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAATGCGGAATCACCGCCGGGGCTCCTCATGTCGGTTTCCTGCCTCTCCGACTACGACCTCCTCTGCGGCGAGGACTCCTCCGGAATCCTCTCCGGAGAGTCGCCGGAGTGCTCCTTCTCCGACATCGACTCCTCACCTCCTCCGCCGTCGCCGACGACAGAGGATTGTTATTCGATCGCGAGCTTCATCGAGCACGAGCGCAACTTCGTTCCGGGATTCGAGTACCTGTCGCGGTTCCAATCTCGCTCCCTGGACGCCAACGCCAGAGAAGAATCAGTTGGATGGATTCTCAAGGTACACGCGTACTATGGCTTTCAGCCTTTGACGGCGTACCTCGCCGTCAACTATATGGATCGGTTTTTGGATTCTCGCCGGTTGCCGGAAACAAATGGGTGGCCTCTGCAACTTGTATCTGTTGCATGCTTGTCTTTGGCAGCAAAGATGGAAGAACCTCTTGTTCCATCTCTCTTGGACCTTCAGATAGAAGGTGCCAAGTACATATTTGAGCCGAGAACAATTCGTAGGATGGAGCTACTTGTTCTCGGTGTCTTAGATTGGAGGCTAAGATCAGTAACACCACTTTGCTTCCTCGCTTTCTTTGCGTGCAAAGTAGATTCAACTGGAACTTTTATCCGGTTCCTTATTTCCAGGGCAACAGAAATCATCGTATCTAATATCCAAGAGGCTAGCTTTCTTGCTTACTGGCCTTCATGCATTGCTGCTGCAGCCATACTCACTGCAGCTAATGAAATTCCTAATTGGTCTGTGGTTAAGCCCGAAAATGCTGAGTCATGGTGCGAGGGACTAAGAAAAGAAAAAGTAATAGGGTGCTACCAGTTGATGCAAGAGCTTGTGATTAACAATAACCAACGGAAACTCCCTACTAAAGTGTTGCCGCAGCTGCGAGTAACAACTCGGACCCGAATGAGGTCAAGTACTGTATCATCATTCTCATCATCCTCTTCAACCTCCTTCTCCTTGTCTTGTAAGAGGAGGAAATTAAATAACCGTTTGTGGGTAGATGACAAAGGAAACTCCGAGTGA

>Glyma.18g133100.2 sequence-type=CDS polypeptide=Glyma.18g133100.2.p locus=Glyma.18g133100 ID=Glyma.18g133100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAATGCGGAATCACCGCCGGGGCTCCTCATGTCGGTTTCCTGCCTCTCCGACTACGACCTCCTCTGCGGCGAGGACTCCTCCGGAATCCTCTCCGGAGAGTCGCCGGAGTGCTCCTTCTCCGACATCGACTCCTCACCTCCTCCGCCGTCGCCGACGACAGAGGATTGTTATTCGATCGCGAGCTTCATCGAGCACGAGCGCAACTTCGTTCCGGGATTCGAGTACCTGTCGCGGTTCCAATCTCGCTCCCTGGACGCCAACGCCAGAGAAGAATCAGTTGGATGGATTCTCAAGGTACACGCGTACTATGGCTTTCAGCCTTTGACGGCGTACCTCGCCGTCAACTATATGGATCGGTTTTTGGATTCTCGCCGGTTGCCGGAAACAAATGGGTGGCCTCTGCAACTTGTATCTGTTGCATGCTTGTCTTTGGCAGCAAAGATGGAAGAACCTCTTGTTCCATCTCTCTTGGACCTTCAGATAGAAGGTGCCAAGTACATATTTGAGCCGAGAACAATTCGTAGGATGGAGCTACTTGTTCTCGGTGTCTTAGATTGGAGGCTAAGATCAGTAACACCACTTTGCTTCCTCGCTTTCTTTGCGTGCAAAGTAGATTCAACTGGAACTTTTATCCGGTTCCTTATTTCCAGGGCAACAGAAATCATCGTATCTAATATCCAAGAGGCTAGCTTTCTTGCTTACTGGCCTTCATGCATTGCTGCTGCAGCCATACTCACTGCAGCTAATGAAATTCCTAATTGGTCTGTGGTTAAGCCCGAAAATGCTGAGTCATGGTGCGAGGGACTAAGAAAAGAAAAAGTAATAGGGTGCTACCAGTTGATGCAAGAGCTTGTGATTAACAATAACCAACGGAAACTCCCTACTAAAGTGTTGCCGCAGCTGCGAGTAACAACTCGGACCCGAATGAGGTCAAGTACTGTATCATCATTCTCATCATCCTCTTCAACCTCCTTCTCCTTGTCTTGTAAGAGGAGGAAATTAAATAACCGTTTGTGGGTAGATGACAAAGGAAACTCCGAGTGA

Predicted protein sequences of Glyma.18g133100

Limit To All Plant Sequences

>Glyma.18g133100.1.p sequence-type=predicted peptide transcript=Glyma.18g133100.1 locus=Glyma.18g133100 ID=Glyma.18g133100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNAESPPGLLMSVSCLSDYDLLCGEDSSGILSGESPECSFSDIDSSPPPPSPTTEDCYSIASFIEHERNFVPGFEYLSRFQSRSLDANAREESVGWILKVHAYYGFQPLTAYLAVNYMDRFLDSRRLPETNGWPLQLVSVACLSLAAKMEEPLVPSLLDLQIEGAKYIFEPRTIRRMELLVLGVLDWRLRSVTPLCFLAFFACKVDSTGTFIRFLISRATEIIVSNIQEASFLAYWPSCIAAAAILTAANEIPNWSVVKPENAESWCEGLRKEKVIGCYQLMQELVINNNQRKLPTKVLPQLRVTTRTRMRSSTVSSFSSSSSTSFSLSCKRRKLNNRLWVDDKGNSE*

>Glyma.18g133100.2.p sequence-type=predicted peptide transcript=Glyma.18g133100.2 locus=Glyma.18g133100 ID=Glyma.18g133100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNAESPPGLLMSVSCLSDYDLLCGEDSSGILSGESPECSFSDIDSSPPPPSPTTEDCYSIASFIEHERNFVPGFEYLSRFQSRSLDANAREESVGWILKVHAYYGFQPLTAYLAVNYMDRFLDSRRLPETNGWPLQLVSVACLSLAAKMEEPLVPSLLDLQIEGAKYIFEPRTIRRMELLVLGVLDWRLRSVTPLCFLAFFACKVDSTGTFIRFLISRATEIIVSNIQEASFLAYWPSCIAAAAILTAANEIPNWSVVKPENAESWCEGLRKEKVIGCYQLMQELVINNNQRKLPTKVLPQLRVTTRTRMRSSTVSSFSSSSSTSFSLSCKRRKLNNRLWVDDKGNSE*

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