SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G51760.1 | AT | peptidase M20/M25/M40 family protein | JGI | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | EnsemblGenomes | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | JGI | N/A | IEA |
| PTHR11014 | Panther | PEPTIDASE M20 FAMILY MEMBER | JGI | N/A | IEA |
| PTHR11014:SF37 | Panther | JGI | N/A | IEA | |
| PF01546 | PFAM | Peptidase family M20/M25/M40 | JGI | N/A | IEA |
| PF07687 | PFAM | Peptidase dimerisation domain | JGI | N/A | IEA |
| PWY-1822 | SoyCyc9 | indole-3-acetate activation I | Plant Metabolic Network | ISS | |
| PWY-6235 | SoyCyc9 | hydroxyjasmonate sulfate biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-51388 | SoyCyc9-rxn | indole-3-acetyl-ala hydrolase | Plant Metabolic Network | ISS |
|
Glyma.18g132000 not represented in the dataset |
Glyma.18g132000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.08g292000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma18g17470 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.18g132000.1 sequence-type=CDS polypeptide=Glyma.18g132000.1.p locus=Glyma.18g132000 ID=Glyma.18g132000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGACCATCATCTAAGACTTATTCTCCTACTCTTCCTGTTTCTACCCACCACCTGCTTCTCTTTCTCATTTCAAACTCCTTCAAGCAATAATGAATTCTCGAATCAAAGTTCTTCTCTGAAGCAGCAGATTCTGGAGCTAGCTAATAGTCCCAGAACGGTGAAATGGATGAAGAGAATAAGGAGGGAAATCCATGAGCACCCAGAACTTGCATATGAAGAGTTCAGAACAAGTGCTATCATAAGGCGTGAGCTTGACCTGTTGGGTGTTGGTTACAAGTGGCCTGTGGCTGGGACTGGTGTGGTGGCAAAAATTGGTTCTGGGTCTCCTCCTTTTGTTGCTCTTAGAGCAGACATGGATGCTTTGCCAATTCAGGAAATGGTTGATTGGGATCATAAGAGCAAAGTAGATGGAAAAATGCATGCTTGCGCACACGATGCACATGTTGCCATGCTACTTGGGGCTGCAAAGATACTGCAAGAAATGCAAGACATGTTACAGACTACTGTTGTTCTAATATTCCAACCAGCTGAGGAAAGAGGCACAGGTGCAAAAGACATGATCCAAGAACAGGTGCTTCAAGATGTTGGGGCTATTCTTGGATTGCACTTAGGAGCAGCGTATCCCACAGGTGTCGTTGCATCACGGCCAGGAGAATTTTTAGCCGGGTGTGGAAGCTTCAAAGCAAAGATCAATGGAAAAGGGGGGTTAGCAGGAGTTCCCCATCATTGTTTTGATCCAGTTTTGGCTGCTTCAACGTCAGTGATCAGCTTGCAAAACATTGTTTCAAGGGAGGCTGATCCTTTAGATTCTCAGGTGCTTTCTGTGGCCATGATCCATGCAGGGTCTGCTCATGACATAATCCCTGATTCAGCTACATTTGGAGGTACTTATAGAGCATTCAGCAAAAAGAGCTTCTATGGACTGAGGAAAAGAATAGAAGAGGTTATTAAAGGGCAGGCTGAAGTACATAGGTGCTCTGGAGAGGTTGAGTTCTTTGGCAATGAACATCCCACAATCCCTCCAACCACAAATGATGTGAGAATATACCAACTAGCACGGCTAGTGTCTAGCAAGATTGTTGGAGAAGATAACATAGAATTAGCACCCCTCTTCACAGGGAGTGAAGATTTTGCATTTTACTTGGAAAAGGTACCCGGGTCATTCGTTCTAGTGGGTACAAGAAATGAGAAGAGTGGATCCATACATCCTGCTCATAGTCCTTACTTTTTCATTGATGAAGATGTGCTTCCCATCGGGGCTGCAATACATGCAGCATTTGCTCTTTCATTCAATTCATATTCAACAAATTCATTCCTTTTGTAA
>Glyma.18g132000.1.p sequence-type=predicted peptide transcript=Glyma.18g132000.1 locus=Glyma.18g132000 ID=Glyma.18g132000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MDHHLRLILLLFLFLPTTCFSFSFQTPSSNNEFSNQSSSLKQQILELANSPRTVKWMKRIRREIHEHPELAYEEFRTSAIIRRELDLLGVGYKWPVAGTGVVAKIGSGSPPFVALRADMDALPIQEMVDWDHKSKVDGKMHACAHDAHVAMLLGAAKILQEMQDMLQTTVVLIFQPAEERGTGAKDMIQEQVLQDVGAILGLHLGAAYPTGVVASRPGEFLAGCGSFKAKINGKGGLAGVPHHCFDPVLAASTSVISLQNIVSREADPLDSQVLSVAMIHAGSAHDIIPDSATFGGTYRAFSKKSFYGLRKRIEEVIKGQAEVHRCSGEVEFFGNEHPTIPPTTNDVRIYQLARLVSSKIVGEDNIELAPLFTGSEDFAFYLEKVPGSFVLVGTRNEKSGSIHPAHSPYFFIDEDVLPIGAAIHAAFALSFNSYSTNSFLL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
