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Report for Sequence Feature Glyma.18g128600

Feature Type:gene_model
Chromosome:Gm18
Start:17334538
stop:17338674
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g128600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G27120.1AT Galactosyltransferase family protein JGI N/AIEA
AT5G62620.1AT Galactosyltransferase family protein JGI N/AIEA
GO:0006486GO-bp protein glycosylation EnsemblGenomesN/AIEA
GO:0006486GO-bp protein glycosylation JGI N/AIEA
GO:0005794GO-cc Golgi apparatus EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0008378GO-mf galactosyltransferase activity EnsemblGenomesN/AIEA
GO:0008378GO-mf galactosyltransferase activity JGI N/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016757GO-mf transferase activity, transferring glycosyl groups EnsemblGenomesN/AIEA
GO:0030246GO-mf carbohydrate binding EnsemblGenomesN/AIEA
GO:0030246GO-mf carbohydrate binding JGI N/AIEA
KOG2287 KOG Galactosyltransferases JGI N/AIEA
PTHR11214Panther BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE JGI N/AIEA
PTHR11214:SF11Panther JGI N/AIEA
PF00337PFAM Galactoside-binding lectin JGI N/AIEA
PF01762PFAM Galactosyltransferase JGI N/AIEA
GN7V-64555SoyCyc9-rxn galactosylxylosylprotein 3-β-galactosyltransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.18g128600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g128600
ParalogEvidenceComments
Glyma.08g294300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g128600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g16870 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g128600
>Glyma.18g128600.2 sequence-type=transcript locus=Glyma.18g128600 ID=Glyma.18g128600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGTGATTAAAATTTGGGTGTGCACAAGCTGGCCCCTGTTGATTCTTTTCCACTTTACGGCTAAGCTTCCAAAGGCCATAGCCATTGTTGATGCATTGAACGTTACTCAAAAACGAAAAAAAAAAAAATTCCCATTGCTTCTGATTCTTCTGGGAGGGTTTAGAAATCACCAATCACCTCATTCTATTCAACTTGATACAAAAAAACTTGTGATTTTTTAGAACAATGAAGAGGGTGAAGAAGCTATACCCATTTTTGGTCCTACCCAACAGGCCTAAACCTCTTCAAATTTTCATGGCTGTGATGTTCCTCTACTTGCTCTTCACCACCTTCGAAATCGAAACCTCTCTTGGTTTCAGAACGAGGTTTGTGTCAGTGTCCTCATTGTTGGGGAATGAAGATCAACACCAACGTACCCATTCCAGCAAAGCCTCAAACTTTCCCTCACAAGGGGTGTTCCAAGGCTCACTGCATCGAAAAGCCTTGCAGGGTTTGCAGAAAGTTTCCACCTTGAGTTTCATCGAGGCTTTGAATGACACCACTGTGGAAGAAAACATGTTTTCTGAACTCCACAAGGCTGCTAGGCATGCTTGGGTTGAAGGGAAGAGGCTCTGGGAACAAGTTGAGAGTGTGAAAGAAACCATGAATGTGGCAAGGTTCAAGGCTGAGAACCTTTCTGATTCGTGTCAGCATTCAATTTCATTATCTGGGTCTGAATTGAGGAAGCAGAATAAAGGGGTCATGGTGATGGTGCTTCCTTGTGGTTTGACATTGGGGTCTCACGTGACTGTTGTGGGGACCCCACGTTGGGCTCACTGGGAGGACGATCCTAAGATATCTGTGGTGAAGGAAGAGGAGGGAAAGGTAATGGTGTCGCAGTTCATGATGGAGCTTCAGGGTTTGAAGAGTGTGGACAAGGAAGAGCCTCCTAGGATACTGCATTTCAATCCCAGGTTGAAGGGGGATTATAGTGGGAGGCCTGTGATTGAGCAGAACACTTGTTACAGGATGCAGTGGGGTTCTGCTCTCAGGTGTGAGGGATGGAAGTCCCGAGCTGACGAGGATACAGCTTCCTTACCCACATCACATCCAAGTTTTGCTCCACAGATGCATCTTGAATTGCTTCCTCAATGGAAAGCTCCACCTCTTGTACACGTGAATGTGGAGCTTTTCATTGGAATACTTTCTGCTGGCAACCATTTTGCTGAGCGGATGGCAGTAAGGAAATCATGGATGCAACATAAACTAATCAAATCTTCAAATGTCGTATCTCGGTTCTTTGTTGCCTTGCATGGAAGGAAAGATTTAAATATGGAGATAAAGAAAGAAGCAGATTATTTTGGCGATATTATTATAGTCCCCTACATGGATCATTATGACCTTGTTGTGTTGAAGACGATAGCTATCACTGAATATGGGATTCGCTCAGTGGCTGCCAAGTATATCATGAAGTGTGATGATGACACGTTTGTCAGAATAGAGTCTATCATCAGCGAAGCAAGAAAAGTAGGAAGTGGTAGAAGTCTCTATATAGGAAATATGAATTACCACCATAGGCCCCTACGTTCTGGCAAATGGGCAGTAACATATGAGGAATGGTCAGAGGAAGAGTATCCTACCTATGCTAATGGTCCAGGCTATACAATCTCTGCAGACATTGCCCAGTTCATTGTATCCAACTTCGAGGAGCACAGATTAAAATTATTTAAAATGGAGGATGTTAGCATGGGAATGTGGGTAGAGCAATTCAACAGTTCAAGGCCAGTTGAGTATGTGCACAGCTTCAAGTTCTGCCAATTTGGGTGCATTGAAGATTACTACACTGCACATTACCAATCTCCAAGACAAATGACCTGTATGTGGGACAAGTTGCAACAAAAGGGAAAGCCCCTATGTTGCAACATGAGATAACATAGTCTATGATCATAATATATTTATGTACATAGGCACTGAGGACCTTTATGACCTCCACATATTCATTCATTGTTTAACTAACCTCTTTTTTTTTTTCATTTCGATTCTCCCTAAAGTAGAAGGCCTAGGTGTATCATAAAATTGAATACTACAGCGATTGCTGAAGGAGCAAACCAATGGTTTGTGAGCTTGTAATGTAGAGAATGTAACTGAAGCCAAATGAAATGATATTTTCTGCATTGACTTTTTTTTTTTTCATGGCATAATTATTCAGTACTGAGTATAGATGT
Coding sequences of Glyma.18g128600
>Glyma.18g128600.1 sequence-type=CDS polypeptide=Glyma.18g128600.1.p locus=Glyma.18g128600 ID=Glyma.18g128600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGAGGGTGAAGAAGCTATACCCATTTTTGGTCCTACCCAACAGGCCTAAACCTCTTCAAATTTTCATGGCTGTGATGTTCCTCTACTTGCTCTTCACCACCTTCGAAATCGAAACCTCTCTTGGTTTCAGAACGAGGTTTGTGTCAGTGTCCTCATTGTTGGGGAATGAAGATCAACACCAACGTACCCATTCCAGCAAAGCCTCAAACTTTCCCTCACAAGGGGTGTTCCAAGGCTCACTGCATCGAAAAGCCTTGCAGGGTTTGCAGAAAGTTTCCACCTTGAGTTTCATCGAGGCTTTGAATGACACCACTGTGGAAGAAAACATGTTTTCTGAACTCCACAAGGCTGCTAGGCATGCTTGGGTTGAAGGGAAGAGGCTCTGGGAACAAGTTGAGAGTGTGAAAGAAACCATGAATGTGGCAAGGTTCAAGGCTGAGAACCTTTCTGATTCGTGTCAGCATTCAATTTCATTATCTGGGTCTGAATTGAGGAAGCAGAATAAAGGGGTCATGGTGATGGTGCTTCCTTGTGGTTTGACATTGGGGTCTCACGTGACTGTTGTGGGGACCCCACGTTGGGCTCACTGGGAGGACGATCCTAAGATATCTGTGGTGAAGGAAGAGGAGGGAAAGGTAATGGTGTCGCAGTTCATGATGGAGCTTCAGGGTTTGAAGAGTGTGGACAAGGAAGAGCCTCCTAGGATACTGCATTTCAATCCCAGGTTGAAGGGGGATTATAGTGGGAGGCCTGTGATTGAGCAGAACACTTGTTACAGGATGCAGTGGGGTTCTGCTCTCAGGTGTGAGGGATGGAAGTCCCGAGCTGACGAGGATACAGTTGATGGACAGGTGAAATGTGAAAAGTGGATTCGTGATGATGATAGCCATGCAGAAGAGGCAAAGGCAACATGGTGGTTAACCAGACTGATTGGGCGAACTAAGAAGGTTACTATAGATTGGCCATACCCTTTTGTAGAGGCTAGATTGTTTGTTCTCACCGTGAGTGCTGGCATGGAAGGCTACCATGTTAGTGTGGATGGAAGGCATGTGACATCTTTTCCCTATCGCACGGGATTTTCTCTTGAGGATTCAACTGGTCTATCCATAAAAGGGGATGTTGATGTGCACTCTATATATGCAGCTTCCTTACCCACATCACATCCAAGTTTTGCTCCACAGATGCATCTTGAATTGCTTCCTCAATGGAAAGCTCCACCTCTTGTACACGTGAATGTGGAGCTTTTCATTGGAATACTTTCTGCTGGCAACCATTTTGCTGAGCGGATGGCAGTAAGGAAATCATGGATGCAACATAAACTAATCAAATCTTCAAATGTCGTATCTCGGTTCTTTGTTGCCTTGCATGGAAGGAAAGATTTAAATATGGAGATAAAGAAAGAAGCAGATTATTTTGGCGATATTATTATAGTCCCCTACATGGATCATTATGACCTTGTTGTGTTGAAGACGATAGCTATCACTGAATATGGGATTCGCTCAGTGGCTGCCAAGTATATCATGAAGTGTGATGATGACACGTTTGTCAGAATAGAGTCTATCATCAGCGAAGCAAGAAAAGTAGGAAGTGGTAGAAGTCTCTATATAGGAAATATGAATTACCACCATAGGCCCCTACGTTCTGGCAAATGGGCAGTAACATATGAGGAATGGTCAGAGGAAGAGTATCCTACCTATGCTAATGGTCCAGGCTATACAATCTCTGCAGACATTGCCCAGTTCATTGTATCCAACTTCGAGGAGCACAGATTAAAATTATTTAAAATGGAGGATGTTAGCATGGGAATGTGGGTAGAGCAATTCAACAGTTCAAGGCCAGTTGAGTATGTGCACAGCTTCAAGTTCTGCCAATTTGGGTGCATTGAAGATTACTACACTGCACATTACCAATCTCCAAGACAAATGACCTGTATGTGGGACAAGTTGCAACAAAAGGGAAAGCCCCTATGTTGCAACATGAGATAA

>Glyma.18g128600.2 sequence-type=CDS polypeptide=Glyma.18g128600.2.p locus=Glyma.18g128600 ID=Glyma.18g128600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGAGGGTGAAGAAGCTATACCCATTTTTGGTCCTACCCAACAGGCCTAAACCTCTTCAAATTTTCATGGCTGTGATGTTCCTCTACTTGCTCTTCACCACCTTCGAAATCGAAACCTCTCTTGGTTTCAGAACGAGGTTTGTGTCAGTGTCCTCATTGTTGGGGAATGAAGATCAACACCAACGTACCCATTCCAGCAAAGCCTCAAACTTTCCCTCACAAGGGGTGTTCCAAGGCTCACTGCATCGAAAAGCCTTGCAGGGTTTGCAGAAAGTTTCCACCTTGAGTTTCATCGAGGCTTTGAATGACACCACTGTGGAAGAAAACATGTTTTCTGAACTCCACAAGGCTGCTAGGCATGCTTGGGTTGAAGGGAAGAGGCTCTGGGAACAAGTTGAGAGTGTGAAAGAAACCATGAATGTGGCAAGGTTCAAGGCTGAGAACCTTTCTGATTCGTGTCAGCATTCAATTTCATTATCTGGGTCTGAATTGAGGAAGCAGAATAAAGGGGTCATGGTGATGGTGCTTCCTTGTGGTTTGACATTGGGGTCTCACGTGACTGTTGTGGGGACCCCACGTTGGGCTCACTGGGAGGACGATCCTAAGATATCTGTGGTGAAGGAAGAGGAGGGAAAGGTAATGGTGTCGCAGTTCATGATGGAGCTTCAGGGTTTGAAGAGTGTGGACAAGGAAGAGCCTCCTAGGATACTGCATTTCAATCCCAGGTTGAAGGGGGATTATAGTGGGAGGCCTGTGATTGAGCAGAACACTTGTTACAGGATGCAGTGGGGTTCTGCTCTCAGGTGTGAGGGATGGAAGTCCCGAGCTGACGAGGATACAGCTTCCTTACCCACATCACATCCAAGTTTTGCTCCACAGATGCATCTTGAATTGCTTCCTCAATGGAAAGCTCCACCTCTTGTACACGTGAATGTGGAGCTTTTCATTGGAATACTTTCTGCTGGCAACCATTTTGCTGAGCGGATGGCAGTAAGGAAATCATGGATGCAACATAAACTAATCAAATCTTCAAATGTCGTATCTCGGTTCTTTGTTGCCTTGCATGGAAGGAAAGATTTAAATATGGAGATAAAGAAAGAAGCAGATTATTTTGGCGATATTATTATAGTCCCCTACATGGATCATTATGACCTTGTTGTGTTGAAGACGATAGCTATCACTGAATATGGGATTCGCTCAGTGGCTGCCAAGTATATCATGAAGTGTGATGATGACACGTTTGTCAGAATAGAGTCTATCATCAGCGAAGCAAGAAAAGTAGGAAGTGGTAGAAGTCTCTATATAGGAAATATGAATTACCACCATAGGCCCCTACGTTCTGGCAAATGGGCAGTAACATATGAGGAATGGTCAGAGGAAGAGTATCCTACCTATGCTAATGGTCCAGGCTATACAATCTCTGCAGACATTGCCCAGTTCATTGTATCCAACTTCGAGGAGCACAGATTAAAATTATTTAAAATGGAGGATGTTAGCATGGGAATGTGGGTAGAGCAATTCAACAGTTCAAGGCCAGTTGAGTATGTGCACAGCTTCAAGTTCTGCCAATTTGGGTGCATTGAAGATTACTACACTGCACATTACCAATCTCCAAGACAAATGACCTGTATGTGGGACAAGTTGCAACAAAAGGGAAAGCCCCTATGTTGCAACATGAGATAA
Predicted protein sequences of Glyma.18g128600
>Glyma.18g128600.1.p sequence-type=predicted peptide transcript=Glyma.18g128600.1 locus=Glyma.18g128600 ID=Glyma.18g128600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKRVKKLYPFLVLPNRPKPLQIFMAVMFLYLLFTTFEIETSLGFRTRFVSVSSLLGNEDQHQRTHSSKASNFPSQGVFQGSLHRKALQGLQKVSTLSFIEALNDTTVEENMFSELHKAARHAWVEGKRLWEQVESVKETMNVARFKAENLSDSCQHSISLSGSELRKQNKGVMVMVLPCGLTLGSHVTVVGTPRWAHWEDDPKISVVKEEEGKVMVSQFMMELQGLKSVDKEEPPRILHFNPRLKGDYSGRPVIEQNTCYRMQWGSALRCEGWKSRADEDTVDGQVKCEKWIRDDDSHAEEAKATWWLTRLIGRTKKVTIDWPYPFVEARLFVLTVSAGMEGYHVSVDGRHVTSFPYRTGFSLEDSTGLSIKGDVDVHSIYAASLPTSHPSFAPQMHLELLPQWKAPPLVHVNVELFIGILSAGNHFAERMAVRKSWMQHKLIKSSNVVSRFFVALHGRKDLNMEIKKEADYFGDIIIVPYMDHYDLVVLKTIAITEYGIRSVAAKYIMKCDDDTFVRIESIISEARKVGSGRSLYIGNMNYHHRPLRSGKWAVTYEEWSEEEYPTYANGPGYTISADIAQFIVSNFEEHRLKLFKMEDVSMGMWVEQFNSSRPVEYVHSFKFCQFGCIEDYYTAHYQSPRQMTCMWDKLQQKGKPLCCNMR*

>Glyma.18g128600.2.p sequence-type=predicted peptide transcript=Glyma.18g128600.2 locus=Glyma.18g128600 ID=Glyma.18g128600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKRVKKLYPFLVLPNRPKPLQIFMAVMFLYLLFTTFEIETSLGFRTRFVSVSSLLGNEDQHQRTHSSKASNFPSQGVFQGSLHRKALQGLQKVSTLSFIEALNDTTVEENMFSELHKAARHAWVEGKRLWEQVESVKETMNVARFKAENLSDSCQHSISLSGSELRKQNKGVMVMVLPCGLTLGSHVTVVGTPRWAHWEDDPKISVVKEEEGKVMVSQFMMELQGLKSVDKEEPPRILHFNPRLKGDYSGRPVIEQNTCYRMQWGSALRCEGWKSRADEDTASLPTSHPSFAPQMHLELLPQWKAPPLVHVNVELFIGILSAGNHFAERMAVRKSWMQHKLIKSSNVVSRFFVALHGRKDLNMEIKKEADYFGDIIIVPYMDHYDLVVLKTIAITEYGIRSVAAKYIMKCDDDTFVRIESIISEARKVGSGRSLYIGNMNYHHRPLRSGKWAVTYEEWSEEEYPTYANGPGYTISADIAQFIVSNFEEHRLKLFKMEDVSMGMWVEQFNSSRPVEYVHSFKFCQFGCIEDYYTAHYQSPRQMTCMWDKLQQKGKPLCCNMR*






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