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Report for Sequence Feature Glyma.18g121800

Feature Type:gene_model
Chromosome:Gm18
Start:15344531
stop:15353282
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g121800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G69710.1AT Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding JGI N/AIEA
KOG4275 KOG Predicted E3 ubiquitin ligase JGI N/AIEA
PTHR22870Panther REGULATOR OF CHROMOSOME CONDENSATION JGI N/AIEA
PTHR22870:SF25Panther JGI N/AIEA
PF00415PFAM Regulator of chromosome condensation (RCC1) repeat JGI N/AIEA
PF01363PFAM FYVE zinc finger JGI N/AIEA
PF08381PFAM Transcription factor regulating root and shoot growth via Pin3 JGI N/AIEA

Expression Patterns of Glyma.18g121800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18g121800 not represented in the dataset
Glyma.18g121800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g121800
ParalogEvidenceComments
Glyma.08g299200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g121800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments


Coding sequences of Glyma.18g121800
>Glyma.18g121800.1 sequence-type=CDS polypeptide=Glyma.18g121800.1.p locus=Glyma.18g121800 ID=Glyma.18g121800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGATCATCAGAAAACCGCTCCTGGCGAGAGAGACATCGAGCAGGCAATTATATCTCTTAAGAAAGGCTCATATCTGCTGAAGTACGGGCAAAGAGGGAAGCCAAAGTTCTGTCCATTTAGGCTTTCCAACGATGAGTCTCTACTCTTATGGTACTCTGGCAAGGACGAGAAACAGCTTAAGCTCAGTACAGTTTCAAGGATCATTCCTGGGCAGCGAACTATATGCAAGGATAAAGATGACGCTGAAATCTGGTTTCCTGGTCTTAAGGCAATAGTTACTCGAGGTAACAACCGCAAGTGGAGATTTGAATCAAGAACTGACGATAGTCTGTATTCTGATAGTCCAAAATCTGGCACACGAAGATCCACTCCGTCCATTGCACCATTCTCTGTAACAGACCCTGGGGATGCTGGTGGAGGTTTTATTGACTTGCAAAATAGATGGATAAAGGCTTTCTCTGAAATAATTTCTTACTCTGCAGCTAGCAAGAGTTCCAGTCAAGCTGAATCACTTGCAAATTCCTCTTTATCCTCTGGGTCTGTGGATAACTCAAGCAATCGAAATTCTGCATCTGAGGCATTTCGAGTTAGTTTATCTAGTGCTGTAAGTTCCTCCAGCCAGGGTTCTTATCATGAAGATTTTGATTCCCTAGGTGATGTTTTTATTTGGGGAGAAGGGATCGCCGATGGAATTCTTGGTGGTGGTGTACATAGAGTTGGAGCCTTATCTAGTTCTGAGATGGATGCATTCCTTCCCAAGGCATTGGAATCAAAGTTAGTTCTAGATGTTCATAGTATTGGTTGTGGCTACAGACATGCTGTTCTAGTTACCAAGCAGGGAGAGATATTTAGTTGGGGAGAGGAGTCAGGAGGTAGGCTTGGACATGGTGTAGAAATGGATGTTTTTCACCCTAAGCTCATTGACACCCTCGGTGGCATGAATATTGAGTTAGTAGCATGTGGAGAATATCATACTTGTGCTGTTACTTATTCTGGGGATCTTTATACATGGGGTGATGGTGCTCACAATTCTGGCATGCTTGGGCATGGAAATGAAGTCAGTCACTGGATTCCCAAGAAAGTAGGTGGTAACTTGGAGGGCTTACGTGTATTATATGTGTCCTGTGGACCTTGGCACACAGCTATTGTTACATCAGCTGGGCAGTTGTTCACATTTGGTGATGGAACTTTTGGTGCCTTAGGACATGGAGATCTTAGTAGCGCAAATATTCCTCGGGAAGTAGAAAATTTGAAAGGGTTGAGAACAACCAGGGTTGCCTGTGGTGTTTGGCACACTGCTGCAGTTGTTGAGGTGGTAAATGAATCTGTGGAATCTTCTACACGCTCATCTAGTGGAAGACTGTTCACCTGGGGTGATGGAGATAAAAGCCAACTTGGACATGCTGATAGGGAACCTAGACTAGTTCCTGAGTGTGTAAATGCATTGAGTACTGAAAACATTTGCCGAGTGGCTTGTGGCCACAGTCTTACAATTGCTTTGACAACGTCAGGACGTTTATATACAATGGGAAGTACAGCGTATGGACAACTTGGCTGTCCTGCATCTGATGGGAAAGTCCCTACATGTGTTGAAGATATAATTTCTGATATCCTGACTTCCAAGGCAGAGGTTTACACATGGGGAAAGGGTTTGAATGGGCAATTAGGTCATGGAGACAGTGATCACAGGAATAAACCAACACTTGTTGAGTTCTTAAAAGATAAACAAGTGAAAAGTGTTTTTTGTGGTTCAAACTTTACTGCTGTTGTATGTCTTCATAAATGGATACCAAGTGTTGATCATTCTGCTTGTGTTGGATGTCGCAATTTATTTAATTTCAGAAGAAAACGTCATAATTGTTACAACTGTGGACTTGTATTTTGCAAATCATGCACCAGCAAGAAATCTATAAAAGCTTCCCTTGCTCCCAATTCCAACAAGCCGTATAGAGTCTGTGATGATTGTTATCTTAAACTTAGGAAAGCTGCCATTGAATCAGTACCCTCAGTGCAAACACCTAGCTTGAGATGCGTAAGTTTGCAAGACAATAGAATCACTAAAATACAGGGAACACTACTAAGGCTTGCATCTTTTGGTTCTATTATTCAAACAGAAAGTAGTCAATCAAAGCTTCCAGATTCACAAGATAGCCATCTTTTCCCATCTTTAAATGGAAAATTGCAGATGAGGGATTTTGCTCCTTCAAAATCATCAAATTCTCTTTCTATGGATTCCAAGAAACACCTTTCAGTTTCTGAGCCCGCTGCAAGAATATCTTGTCAATCAATGTCACCAGTTTCATCAAAGTCAAGTCCAAGACAATCTTATGAAGATATAAATGATGATTTAAAGTACAGAAATGATATTTTAAGTCTAGAAGTTATAAGTTTAAGGACACTGGTTGAAGAGCTTACTCACAAGTCAAAAAGTTTAGAGGCTGAACATGAGAGAACATCAACGCAATTGAAGGAAATGACTGCAGTAGCTGCAGATGAAGCTGGAAAGTGTAAATCAGCAAAAGAGGTCATAAAGCCATTAACTGCACAGTTGAAAGAAATGGTGGAAAGACTGCCAGAAGGACATAATACTGACTCCAGTACAGAGCCCTTTGCTGAAAACACTAGTAGCATTCTACATAATTCCTTAGATGAGAGCCATATAAGAAACACCGTCATTCCCAAAAATGAAGGCAGCAGCATTGTAACAAATCTGATATTAGCTAATGGTACCAAAACACAAAGTGGAAAGGCAGAGTGGGTAGTGCAAGATGAACCAGGTGTGTATCCAGGTGGTGGTAATGAGCTTAAGCGTGTCCGCTTCAGTCGAAGGCATTTCACAGAAGAGCAAGCTGAAAAATGGTGGGCTGAAAATGGAACCAAAATATTGGAGCGGCACAATATAGTTGCTTTATTGAATGCAAGAGAATCTGTTCCCTGA
Predicted protein sequences of Glyma.18g121800
>Glyma.18g121800.1.p sequence-type=predicted peptide transcript=Glyma.18g121800.1 locus=Glyma.18g121800 ID=Glyma.18g121800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADHQKTAPGERDIEQAIISLKKGSYLLKYGQRGKPKFCPFRLSNDESLLLWYSGKDEKQLKLSTVSRIIPGQRTICKDKDDAEIWFPGLKAIVTRGNNRKWRFESRTDDSLYSDSPKSGTRRSTPSIAPFSVTDPGDAGGGFIDLQNRWIKAFSEIISYSAASKSSSQAESLANSSLSSGSVDNSSNRNSASEAFRVSLSSAVSSSSQGSYHEDFDSLGDVFIWGEGIADGILGGGVHRVGALSSSEMDAFLPKALESKLVLDVHSIGCGYRHAVLVTKQGEIFSWGEESGGRLGHGVEMDVFHPKLIDTLGGMNIELVACGEYHTCAVTYSGDLYTWGDGAHNSGMLGHGNEVSHWIPKKVGGNLEGLRVLYVSCGPWHTAIVTSAGQLFTFGDGTFGALGHGDLSSANIPREVENLKGLRTTRVACGVWHTAAVVEVVNESVESSTRSSSGRLFTWGDGDKSQLGHADREPRLVPECVNALSTENICRVACGHSLTIALTTSGRLYTMGSTAYGQLGCPASDGKVPTCVEDIISDILTSKAEVYTWGKGLNGQLGHGDSDHRNKPTLVEFLKDKQVKSVFCGSNFTAVVCLHKWIPSVDHSACVGCRNLFNFRRKRHNCYNCGLVFCKSCTSKKSIKASLAPNSNKPYRVCDDCYLKLRKAAIESVPSVQTPSLRCVSLQDNRITKIQGTLLRLASFGSIIQTESSQSKLPDSQDSHLFPSLNGKLQMRDFAPSKSSNSLSMDSKKHLSVSEPAARISCQSMSPVSSKSSPRQSYEDINDDLKYRNDILSLEVISLRTLVEELTHKSKSLEAEHERTSTQLKEMTAVAADEAGKCKSAKEVIKPLTAQLKEMVERLPEGHNTDSSTEPFAENTSSILHNSLDESHIRNTVIPKNEGSSIVTNLILANGTKTQSGKAEWVVQDEPGVYPGGGNELKRVRFSRRHFTEEQAEKWWAENGTKILERHNIVALLNARESVP*






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