SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.18g120700

Feature Type:gene_model
Chromosome:Gm18
Start:15147983
stop:15149476
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g120700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G24090.1AT chitinase A JGI N/AIEA
GO:0005975GO-bp carbohydrate metabolic process EnsemblGenomesN/AIEA
GO:0005975GO-bp carbohydrate metabolic process JGI N/AIEA
GO:0006032GO-bp chitin catabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0005576GO-cc extracellular region EnsemblGenomesN/AIEA
GO:0004553GO-mf hydrolase activity, hydrolyzing O-glycosyl compounds EnsemblGenomesN/AIEA
GO:0004553GO-mf hydrolase activity, hydrolyzing O-glycosyl compounds JGI N/AIEA
GO:0004568GO-mf chitinase activity EnsemblGenomesN/AIEA
GO:0008061GO-mf chitin binding EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016798GO-mf hydrolase activity, acting on glycosyl bonds EnsemblGenomesN/AIEA
PF00704PFAM Glycosyl hydrolases family 18 JGI N/AIEA
PWY-6902SoyCyc9 chitin degradation II (Vibrio) Plant Metabolic Network ISS
GN7V-47645SoyCyc9-rxn chitinase Plant Metabolic Network ISS

Expression Patterns of Glyma.18g120700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.18g120700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g15310 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g120700
>Glyma.18g120700.1 sequence-type=CDS polypeptide=Glyma.18g120700.1.p locus=Glyma.18g120700 ID=Glyma.18g120700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATCGAAATCATCACTCTCAATCAGATTCTTGTGCTTACTCTTGTTAGCACTAGCAAATGGTTCTAATGCTGGCAAAATTGCAATCTACTGGGGCCAGAATGGCAACGAGGGCACGCTGGCCGAGGCTTGTGCCACGGGGAACTATGATTATGTGATCATAGCCTTTTTGCCAACCTTTGGCAATGGCCAAACTCCTATGATTAACCTTGCTGGTCATTGTGATCCATACAGTAATGGTTGCACTGGATTAAGCTCTGACATCAAATCTTGTCAAGCCAAAGGCATCAAAGTATTGCTCTCTCTAGGAGGAGGTGCTGGAAGCTACTCAATTGCATCAACTCAAGATGCAAGCCAAGTAGCCACTTACCTTTGGAACAACTTCTTGGGGGGACAGTCATCGTCTCGCCCTCTTGGCCCCGCCGTTCTTGATGGCATTGATTTTGACATTGAAGGTGGATCAAACCAACACTGGGGTGATCTTGCCAAGTTCCTTAAAGGGTATGGAAAGCAAGTGTACATTACTGCAGCACCTCAGTGCCCATTTCCTGATGCTTGGATCGGAAATGCTCTCACAACAGGCCTTTTTGACTTTGTTTGGGTCCAATTCTACAACAACCCTCCTTGCCAATACAATTCTGGGGCAATTAGTAACCTTGAAGATGCATGGAAGCAATGGATCACAAGTATCCCTGCCAACAAGATATTCTTGGGGTTACCAGCTTCTCCACTGGCAGCAGGAAGTGGTTTCATTCCTCCTGCTGATGTTACATCCAAGGTGCTTCCAGCCATTAAGGGTTCTTCTAAATATGGAGGTGTTATGCTGTGGTCAAGGTATTATGATGTTCAGAGTGGTTACAGCTCTTCTATTAAGAAATATGTTTGA
Predicted protein sequences of Glyma.18g120700
>Glyma.18g120700.1.p sequence-type=predicted peptide transcript=Glyma.18g120700.1 locus=Glyma.18g120700 ID=Glyma.18g120700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASKSSLSIRFLCLLLLALANGSNAGKIAIYWGQNGNEGTLAEACATGNYDYVIIAFLPTFGNGQTPMINLAGHCDPYSNGCTGLSSDIKSCQAKGIKVLLSLGGGAGSYSIASTQDASQVATYLWNNFLGGQSSSRPLGPAVLDGIDFDIEGGSNQHWGDLAKFLKGYGKQVYITAAPQCPFPDAWIGNALTTGLFDFVWVQFYNNPPCQYNSGAISNLEDAWKQWITSIPANKIFLGLPASPLAAGSGFIPPADVTSKVLPAIKGSSKYGGVMLWSRYYDVQSGYSSSIKKYV*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo