SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.18g120400

Feature Type:gene_model
Chromosome:Gm18
Start:15086033
stop:15089865
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g120400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G46210.1AT Fatty acid/sphingolipid desaturase JGI N/AIEA
GO:0006629GO-bp lipid metabolic process EnsemblGenomesN/AIEA
GO:0006629GO-bp lipid metabolic process JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0020037GO-mf heme binding JGI N/AIEA
KOG4232 KOG Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase JGI N/AIEA
PTHR19353Panther FATTY ACID DESATURASE 2 JGI N/AIEA
PF00173PFAM Cytochrome b5-like Heme/Steroid binding domain JGI N/AIEA
PF00487PFAM Fatty acid desaturase JGI N/AIEA
PWY-7601SoyCyc9 arachidonate biosynthesis IV (8-detaturase, lower eukaryotes) Plant Metabolic Network ISS
GN7V-50237SoyCyc9-rxn icosatrienoyl-lipid 8-desaturase Plant Metabolic Network ISS

Proteins Associated with Glyma.18g120400
LocusGene SymbolProtein Name
SLD1.6 sphingolipid delta-8 desaturase

Expression Patterns of Glyma.18g120400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18g120400 not represented in the dataset
Glyma.18g120400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g120400
ParalogEvidenceComments
Glyma.08g299900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g120400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g15261 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g120400
>Glyma.18g120400.1 sequence-type=CDS polypeptide=Glyma.18g120400.1.p locus=Glyma.18g120400 ID=Glyma.18g120400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGGAGTTTGAAGAGGAAGGTGGTGTAAACCCAATCATCATTGGGTGGAGAAGGCGGACGCGATTACTTGTGGCCGTTGGATTTGATCTTGTGAGAAACCATGAGATACAATATCGATTGTGGAGAGTGGAATTCAAGGAGCTGAAGGAGCACAACAAGTCAGGGGATTTGTGGATTTCAATCCAAGGGAAGGTTTACAATGTTTCAGATTGGGCAAAGGACCACCCTGGTGGAGAGGTTCCCTTGTTGAACCTTGCAGGCCAGGATGTGACTGATGCATTCATAGCATACCATCCAGGCTCAGCATGGAAGTATCTTGATCCCTTCTTCACAGGGTACCACCTGAGGGATTTCAAGGTCTCAGAGGTGTCAAAAGATTACAGAAAGCTTGTGTCTGAGTTTGCCAAAGTGGGCCTTTTTGAGAAGAAGGAACATGTCACTCTTTACACACTGTCCTCTGTTGCTGTCATGTTTTCAATTGTTGTTTATGGTGTCATAGGGTGCAATAGTGTGTGGGCTCATCTGGGTGCTGCCCTCTTGCTGGGCTTGCTTTGGATGCAAAGCACCTATGTGGGTCATGACTCTGGCCACTATGAGGTCATGTCAAGCCCTGGCTACAACAAATTGGCACAAATCCTCTGTGGGAACTGCATGACTGGGATAAGCATTGCTTGGTGGAAGTGGACTCACAATGCTCACCACATCTCCTGCAACAGCCTTGACTATGATCCTGATCTCCAGCACATCCCGGTCTTCGCTGTGTCGACGCGCTTCTTCAACTCAATCAAGTCATGTTTCTATGGAAGGAAATTGGTGTTTGATTCCTTGTCAAGGTTTCTCATCAGTTACCAGCACTGGACATTCTACCCAGTTTTGTGCTTTGCAAGGGTCAATTTGTACCTCCAGACTTTGTTGCTGTTGTTCTCTAGGAGAAAAGTGCCAGATAGAGCCTTCAACATAATGGGGATCCTAGTGTTTTGGATTTGGTTCCCTCTATTGATCTCATCCCTGCCAAATTGGGGAGAAAGGGTCATGTTTGTTTTGGCCAGTTTTGCTGTTTGCTCCATCCAACACCTTCAATTTTGTTTGAACCATTTCGCAGCAGATGTGTATGAGGGCCCACCAAATGGCAATGACTGGTTTGAGAAGCAAACTGGTGGCACATTGGACATCTCTTGCTCTACATGGATGGATTGGTTCTTTGGCGGCTTGCAATTCCAACTTGAGCACCATTTGTTCCCTAGGCTCCCAAGGGCACAATTGAGGAAAATCTCACCTTTGGTGATTGACCTTTGCAAGAAGCACAATTTGCCTTATAGGAGTTTGACATTTGTTGAGGCCAATCTTTGGACTCTTAAGACCCTTAGGACTGCTGCTCTCCAGGCCAGGAATCTCAGTAACCCTTCTTCCCAGAATTTGTTGTGGGAAGCTTTTAACACTCATGGTTGA
Predicted protein sequences of Glyma.18g120400
>Glyma.18g120400.1.p sequence-type=predicted peptide transcript=Glyma.18g120400.1 locus=Glyma.18g120400 ID=Glyma.18g120400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKEFEEEGGVNPIIIGWRRRTRLLVAVGFDLVRNHEIQYRLWRVEFKELKEHNKSGDLWISIQGKVYNVSDWAKDHPGGEVPLLNLAGQDVTDAFIAYHPGSAWKYLDPFFTGYHLRDFKVSEVSKDYRKLVSEFAKVGLFEKKEHVTLYTLSSVAVMFSIVVYGVIGCNSVWAHLGAALLLGLLWMQSTYVGHDSGHYEVMSSPGYNKLAQILCGNCMTGISIAWWKWTHNAHHISCNSLDYDPDLQHIPVFAVSTRFFNSIKSCFYGRKLVFDSLSRFLISYQHWTFYPVLCFARVNLYLQTLLLLFSRRKVPDRAFNIMGILVFWIWFPLLISSLPNWGERVMFVLASFAVCSIQHLQFCLNHFAADVYEGPPNGNDWFEKQTGGTLDISCSTWMDWFFGGLQFQLEHHLFPRLPRAQLRKISPLVIDLCKKHNLPYRSLTFVEANLWTLKTLRTAALQARNLSNPSSQNLLWEAFNTHG*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo