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Report for Sequence Feature Glyma.18g119800

Feature Type:gene_model
Chromosome:Gm18
Start:14895766
stop:14899153
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g119800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G09270.1AT importin alpha isoform 4 JGI N/AIEA
GO:0006606GO-bp protein import into nucleus EnsemblGenomesN/AIEA
GO:0006607GO-bp NLS-bearing protein import into nucleus EnsemblGenomesN/AIEA
GO:0015031GO-bp protein transport EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005643GO-cc nuclear pore EnsemblGenomesN/AIEA
GO:0005654GO-cc nucleoplasm EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0005488GO-mf binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0008139GO-mf nuclear localization sequence binding EnsemblGenomesN/AIEA
GO:0008565GO-mf protein transporter activity EnsemblGenomesN/AIEA
GO:0061608GO-mf nuclear import signal receptor activity EnsemblGenomesN/AIEA
KOG0166 KOG Karyopherin (importin) alpha JGI N/AIEA
PTHR23316Panther IMPORTIN ALPHA JGI N/AIEA
PF00514PFAM Armadillo/beta-catenin-like repeat JGI N/AIEA

Expression Patterns of Glyma.18g119800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.18g119800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g15130 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g119800
>Glyma.18g119800.1 sequence-type=CDS polypeptide=Glyma.18g119800.1.p locus=Glyma.18g119800 ID=Glyma.18g119800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCACTGCAACCTGGTTCTGGTTCTGGTTCTGGTTCTGATTCTGGTTCTGGTTCTGAGAAGAGGAAGAAAAGCTATGACAGTGAAATCAATCTCGTCGATGACACCCCCCTCAAGAAAGGAAGAAGAGAAGAATTGTCTTCAGAAATCCCTTCCAAAGAAAAGCTTTTGGAAGCTATTCCCGAGATGAAGCAACGTATATGGTCTGAGTGCCCTGACGAACAAATGGACGCAATGATGCACTTTACAAATCTGTTAGGATCTATAGAGCCCCCTCGTCCAATTGATGAGGTGATTGAGGCAGAAGTTGTCCCTCGCTTTGTGCAATTCTTGGATATGTATGATAAACCCGACTTGCAGTTTGAAGCTGTATGGTCGTTAACCAATATTGCTAGCGGAAAATCCCATCACACAAGAGTTGTCGTTGAACATGGCGCAGTTCCCTTGTTGGTGAAACTTCTCATCCTTAGCAACAATGAGGACGTCATAGAACAGGTAGTATGGGCTATAAGTAACATTGCTGGTGAATCCCCAAAATATAGGGATCTTGTTCTTGAGGAAGGTGTTCTTCTACCGTTAATATCTCTGTTGGGTCCACCACTTCCAACAATGTCTATGTTGTTGACTACTACATGGACTTTATCTAATTTGGTCCGTGGAAAGCCTCACGTACAATTTAAACAGGTAGAGCCTCTCATGCCTGTCCTTAAGACACTCATCGACATGGACAACGAAGAAGTTTTATTAAATGCATGCAGTGCTCTTTATTTCCTTTCAAATGTCTCAGCTGGCGCAACTCAGGCTATTATCGAAGCAGAAGTTTGCCCAAAACTAGTGGAGCTTTTGCTGTATTCATCAGATTCAGTTAGTTTACTTGCACTTCAGACTTTGGGAAACATCGCTGCTGGTAATGATGCTCAGACTCAGCATGTAATTGATAACCAATTTCTCCCACCTGTTCGTCTACTTCTTTTTCTCACGCGAGAACGAAATGAAATCATCTTCAGAAAAGCTTGTTGGGCAATCTCAAATATCACAGCTGGTAATAGAACTCAAATACAGGCAGTGATTGATGCCGAAATTTTTCCTATTCTTGTTGGGTTTTTTTGTCATCATCATGCTGACTCTGATTTTGATATCAAGAAAGAGGTGGTCTGGGCCATCACCAATGCCACTAGAAGAGGATCTGCTGACCAAATCATGGACCTGGCGGATCAAGGTTGCGCTAAGCCTCTAAGTGAACTCTTGACCCATCCAAACCCAGAAATTGTGTCAATTTGTGTCGAGGGGCTACAGAAAATTTTGATGGCTCGGATAAGCCAACAACAACGAAGATAG
Predicted protein sequences of Glyma.18g119800
>Glyma.18g119800.1.p sequence-type=predicted peptide transcript=Glyma.18g119800.1 locus=Glyma.18g119800 ID=Glyma.18g119800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSLQPGSGSGSGSDSGSGSEKRKKSYDSEINLVDDTPLKKGRREELSSEIPSKEKLLEAIPEMKQRIWSECPDEQMDAMMHFTNLLGSIEPPRPIDEVIEAEVVPRFVQFLDMYDKPDLQFEAVWSLTNIASGKSHHTRVVVEHGAVPLLVKLLILSNNEDVIEQVVWAISNIAGESPKYRDLVLEEGVLLPLISLLGPPLPTMSMLLTTTWTLSNLVRGKPHVQFKQVEPLMPVLKTLIDMDNEEVLLNACSALYFLSNVSAGATQAIIEAEVCPKLVELLLYSSDSVSLLALQTLGNIAAGNDAQTQHVIDNQFLPPVRLLLFLTRERNEIIFRKACWAISNITAGNRTQIQAVIDAEIFPILVGFFCHHHADSDFDIKKEVVWAITNATRRGSADQIMDLADQGCAKPLSELLTHPNPEIVSICVEGLQKILMARISQQQRR*






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