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Report for Sequence Feature Glyma.18g118400

Feature Type:gene_model
Chromosome:Gm18
Start:14647924
stop:14653396
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g118400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G03250.1AT Homeodomain-like superfamily protein JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0003700GO-mf sequence-specific DNA binding transcription factor activity JGI N/AIEA
GO:0043565GO-mf sequence-specific DNA binding JGI N/AIEA
PTHR24326Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24326:SF77Panther JGI N/AIEA
PF00046PFAM Homeobox domain JGI N/AIEA

Expression Patterns of Glyma.18g118400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g118400
ParalogEvidenceComments
Glyma.08g301700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g118400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g14910 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g118400
>Glyma.18g118400.2 sequence-type=transcript locus=Glyma.18g118400 ID=Glyma.18g118400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTTATTTATTATTTTGAGCAAAGCTGCATATTTTCCTTTCCTTTTCTTCAGCGTTCATTCATTCTGGAAAAAATAAAGCACAGTGAATTTCAATTCAACAATTaaaaacaaaaaaaaaacaaaaaTTGATTTCCCTGTTCAATCAGAAGGTAAAAACAAAACCAAATGTGAAAGCTGATTGGAGGAAGAAGCAAATGAAATAAAAAAGAGAGAGAAATTGTTCTTCTGTCTCTATTGGCTTTCAACTTTCCCCAGAAGTTACTTTCTCTCTTTCTTTTCTCTATGACGAATTAAGTGTCAAATTGAATGAATCACACAGACCCACATGTTAATTTTGCATTTTCTCTTGGTTTGGGTCAAATGGGTCTCATTTTTCTGAGAACCCAGTGAAAACGCTTGCACCTTTGACTCCAAAAGCTGCAGAGTAGAGGGAGATTCATCACAATTCCTCACAACCATGGAAGAAGCAACTGAGTTCCACTCTGAAGAAAATAAATTGTCTATGGAGAAAAATAAGAAAAGAAGGCTCAAAACACCGGCCCAGCTTAAGGGCTTGGAAGATTTTTATAATGATAACAAATATCCCACGGAGGAAATGAAATCAGAACTTGCCGATGAGTTAGAGTTGACAGAAAAGCAAATATCTGGATGGTTTTGCCACAGAAGATTGAAAGATAAAAAAATGTTGAATGATGAAGTATGTGCTAATGGACGACATGATCGTTCAAGTGGTGTCATCCAGGATCGTGGCAGTGGTCTAGTGCAGGATTCATGCGGAAGCACTAAACATGTTGACTATAGGTATCTGGATCCCAAAGAGGTTGAGAGCCATGGCCTCTATAACCATGGATTTTCAGCTGCAGATATGATGTATGGTCACAATAACCATCATTATACAGAAAATGATAGTGCAACAGATAACACATCATCTGAGAGTAGCTCCTCTTTACAAGACCGATTGCTTCGTCAAGGAAAGGATCTGTATGATATGGAGCCTTCAAGTCATCTTACACCTAATGGATCTCTTCCGCCTCTCAATATCAAGGGTGCAAATAACTTGGGATATAAACCATCAGGATATTTGAAAGTGAAGGGAGATATAGAACATGCTGCTATTACTGCTGTTAAAAAGCAATTAGGAAAGCATTATCGGGAAGACGGTCCACTACTTACTGTTGAATTTGATACAATTCCTCCTGAGGCATTTGAATGCCAAATTGCTGATCTAGCTAATGAAGCATACTATGCTGCAAATCCTGCTCTTCCAAATTCTCCAGAAGTCTCTGCTGTGAAAAAACAATCCAGTCTTAGTTCTAGATATGATTCATATTTTACCAAAATCAGTTCCCAAGATTCACATATGGACAGAGGTGACTTTGGCTCCTTGCATGATTCTGATTTCCAGGATAAGAAATCCTTCCAGGTTATAAATCAAAGGCAAAATTTTCAGAGTTTTACCAATCCTTTGCCTCACAAGAACTCTTCCCTGGATTTGAATGCAGACTCTACTGGGGAAGCATCTGCTTATAATAACATAAAAAATCGTAGAAAGGGTACTAAACATGGTTTTGATGGGGTGAGATATGATTCTGCTTCTAACCCTAGTGATCACTATGAAGAGAATAATAACCTTGCAGTTAAGCAGACAGATTCTCTGCTACATGGCTATGAAAACAGCAATCTGAAGAATGTACAAAGGAGTGAATATGTGAAATCTAAACCTTCCAATTCAGTACATAAGTCTCAAATTTACTTGGATACTGAAGAAAGAAGAGGGCTTAATAAAAGGATGGCAAAGGAAGAGAAGTTTGATGGGGATAGAAAGGTAAAAAAACAATATCGTGATCCAGATGAAGTTAGGGCGCTTACAAATGAAATGATGGTTGCAAAGCGGGCTAAAGTTGATCCACTTGAACAATATGATGTTAAACAATCATCTGTTGCTGAGTTGGAACCAAGAAAAAGTCAAAGATGATCATGTAGGTCTGCTGCAGAGATGCCATCTAGCTTTAGTGAGGATGAAACGGCTGAAACCAGTTCCTCAGCGGATTAAGTGTTGTTGTCAGATATGATATTTGTAGGGTTTCTCTATGCCATTGGTTTTGTACAGTCTATAGAGACAGATCCATTTTGCACAGTAACATGTAGAAAGACACACTAACATGACTAACTTGATTTGCTGTTGTGCTTGCTTATTTGCTTCTGTAACAAAAGAAACCCCACTCCCTACCCCTTTTCTTAAAATTTTGGATGTAAAATCTCATTTTCATGCAGCTGCTTGTGGTAGGAAGGATCCAAATGCAGTTTATAGATACAGTGTCTTTTTTTTTTTTCACAATGATTAATTTGTGGTGTGTTTGATCCACCTTTTCATCACGTTGAGCGTCAATCCAACATTTGAGGGGAATTTTCATGTTGGATTGACGTTCAACGTGCATTGAAAAGCGGGATTTGGCTTTTCCAAACACTCCATTGTAGTGCCTCTGGCATCTTAGTTTGGTTCAATTGGAGCCTTGGTTGGACTGGTTATCCACTTGTGCTTTTAGTATTTAGAAGAATAATTTTGATTGGTTTGGATTGAGGTGAAAGAACACCAGAAGATCTTTTGGAAAAGTGATTTAAATTGATCCTTCATTCATACTCAGTGTGCTTGCACTTACAATGTATGAAGC
Coding sequences of Glyma.18g118400
>Glyma.18g118400.1 sequence-type=CDS polypeptide=Glyma.18g118400.1.p locus=Glyma.18g118400 ID=Glyma.18g118400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGAAGCAACTGAGTTCCACTCTGAAGAAAATAAATTGTCTATGGAGAAAAATAAGAAAAGAAGGCTCAAAACACCGGCCCAGCTTAAGGGCTTGGAAGATTTTTATAATGATAACAAATATCCCACGGAGGAAATGAAATCAGAACTTGCCGATGAGTTAGAGTTGACAGAAAAGCAAATATCTGGATGGTTTTGCCACAGAAGATTGAAAGATAAAAAAATGTTGAATGATGAAGTATGTGCTAATGGACGACATGATCGTTCAAGTGGTGTCATCCAGGATCGTGGCAGTGGTCTAGTGCAGGATTCATGCGGAAGCACTAAACATGTTGACTATAGGTATCTGGATCCCAAAGAGGTTGAGAGCCATGGCCTCTATAACCATGGATTTTCAGCTGCAGATATGATGTATGGTCACAATAACCATCATTATACAGAAAATGATAGTGCAACAGATAACACATCATCTGAGAGTAGCTCCTCTTTACAAGACCGATTGCTTCGTCAAGGAAAGGATCTGTATGATATGGAGCCTTCAAGTCATCTTACACCTAATGGATCTCTTCCGCCTCTCAATATCAAGGGTGCAAATAACTTGGGATATAAACCATCAGGATATTTGAAAGTGAAGGGAGATATAGAACATGCTGCTATTACTGCTGTTAAAAAGCAATTAGGAAAGCATTATCGGGAAGACGGTCCACTACTTACTGTTGAATTTGATACAATTCCTCCTGAGGCATTTGAATGCCAAATTGCTGATCTAGCTAATGAAGCATACTATGCTGCAAATCCTGCTCTTCCAAATTCTCCAGAAGTCTCTGCTGTGAAAAAACAATCCAGTCTTAGTTCTAGATATGATTCATATTTTACCAAAATCAGTTCCCAAGATTCACATATGGACAGAGGTGACTTTGGCTCCTTGCATGATTCTGATTTCCAGGATAAGAAATCCTTCCAGGTTATAAATCAAAGGCAAAATTTTCAGAGTTTTACCAATCCTTTGCCTCACAAGAACTCTTCCCTGGATTTGAATGCAGACTCTACTGGGGAAGCATCTGCTTATAATAACATAAAAAATCGTAGAAAGGGTACTAAACATGGTTTTGATGGGGTGAGATATGATTCTGCTTCTAACCCTAGTGATCACTATGAAGAGAATAATAACCTTGCAGTTAAGCAGACAGATTCTCTGCTACATGGCTATGAAAACAGCAATCTGAAGAATGTACAAAGGAGTGAATATGTGAAATCTAAACCTTCCAATTCAGTACATAAGTCTCAAATTTACTTGGATACTGAAGAAAGAAGAGGGCTTAATAAAAGGATGGCAAAGGAAGAGAAGTTTGATGGGGATAGAAAGGTAAAAAAACAATATCGTGATCCAGATGAAGTTAGGGCGCTTACAAATGAAATGATGGTTGCAAAGCGGGCTAAAGTTGATCCACTTGAACAATATGATGTTAAACAATCATCTGTTGCTGAGTTGGAACCAAGAAAAAGTCAAAGGTCTGCTGCAGAGATGCCATCTAGCTTTAGTGAGGATGAAACGGCTGAAACCAGTTCCTCAGCGGATTAA

>Glyma.18g118400.2 sequence-type=CDS polypeptide=Glyma.18g118400.2.p locus=Glyma.18g118400 ID=Glyma.18g118400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGAAGCAACTGAGTTCCACTCTGAAGAAAATAAATTGTCTATGGAGAAAAATAAGAAAAGAAGGCTCAAAACACCGGCCCAGCTTAAGGGCTTGGAAGATTTTTATAATGATAACAAATATCCCACGGAGGAAATGAAATCAGAACTTGCCGATGAGTTAGAGTTGACAGAAAAGCAAATATCTGGATGGTTTTGCCACAGAAGATTGAAAGATAAAAAAATGTTGAATGATGAAGTATGTGCTAATGGACGACATGATCGTTCAAGTGGTGTCATCCAGGATCGTGGCAGTGGTCTAGTGCAGGATTCATGCGGAAGCACTAAACATGTTGACTATAGGTATCTGGATCCCAAAGAGGTTGAGAGCCATGGCCTCTATAACCATGGATTTTCAGCTGCAGATATGATGTATGGTCACAATAACCATCATTATACAGAAAATGATAGTGCAACAGATAACACATCATCTGAGAGTAGCTCCTCTTTACAAGACCGATTGCTTCGTCAAGGAAAGGATCTGTATGATATGGAGCCTTCAAGTCATCTTACACCTAATGGATCTCTTCCGCCTCTCAATATCAAGGGTGCAAATAACTTGGGATATAAACCATCAGGATATTTGAAAGTGAAGGGAGATATAGAACATGCTGCTATTACTGCTGTTAAAAAGCAATTAGGAAAGCATTATCGGGAAGACGGTCCACTACTTACTGTTGAATTTGATACAATTCCTCCTGAGGCATTTGAATGCCAAATTGCTGATCTAGCTAATGAAGCATACTATGCTGCAAATCCTGCTCTTCCAAATTCTCCAGAAGTCTCTGCTGTGAAAAAACAATCCAGTCTTAGTTCTAGATATGATTCATATTTTACCAAAATCAGTTCCCAAGATTCACATATGGACAGAGGTGACTTTGGCTCCTTGCATGATTCTGATTTCCAGGATAAGAAATCCTTCCAGGTTATAAATCAAAGGCAAAATTTTCAGAGTTTTACCAATCCTTTGCCTCACAAGAACTCTTCCCTGGATTTGAATGCAGACTCTACTGGGGAAGCATCTGCTTATAATAACATAAAAAATCGTAGAAAGGGTACTAAACATGGTTTTGATGGGGTGAGATATGATTCTGCTTCTAACCCTAGTGATCACTATGAAGAGAATAATAACCTTGCAGTTAAGCAGACAGATTCTCTGCTACATGGCTATGAAAACAGCAATCTGAAGAATGTACAAAGGAGTGAATATGTGAAATCTAAACCTTCCAATTCAGTACATAAGTCTCAAATTTACTTGGATACTGAAGAAAGAAGAGGGCTTAATAAAAGGATGGCAAAGGAAGAGAAGTTTGATGGGGATAGAAAGGTAAAAAAACAATATCGTGATCCAGATGAAGTTAGGGCGCTTACAAATGAAATGATGGTTGCAAAGCGGGCTAAAGTTGATCCACTTGAACAATATGATGTTAAACAATCATCTGTTGCTGAGTTGGAACCAAGAAAAAGTCAAAGATGA
Predicted protein sequences of Glyma.18g118400
>Glyma.18g118400.1.p sequence-type=predicted peptide transcript=Glyma.18g118400.1 locus=Glyma.18g118400 ID=Glyma.18g118400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEEATEFHSEENKLSMEKNKKRRLKTPAQLKGLEDFYNDNKYPTEEMKSELADELELTEKQISGWFCHRRLKDKKMLNDEVCANGRHDRSSGVIQDRGSGLVQDSCGSTKHVDYRYLDPKEVESHGLYNHGFSAADMMYGHNNHHYTENDSATDNTSSESSSSLQDRLLRQGKDLYDMEPSSHLTPNGSLPPLNIKGANNLGYKPSGYLKVKGDIEHAAITAVKKQLGKHYREDGPLLTVEFDTIPPEAFECQIADLANEAYYAANPALPNSPEVSAVKKQSSLSSRYDSYFTKISSQDSHMDRGDFGSLHDSDFQDKKSFQVINQRQNFQSFTNPLPHKNSSLDLNADSTGEASAYNNIKNRRKGTKHGFDGVRYDSASNPSDHYEENNNLAVKQTDSLLHGYENSNLKNVQRSEYVKSKPSNSVHKSQIYLDTEERRGLNKRMAKEEKFDGDRKVKKQYRDPDEVRALTNEMMVAKRAKVDPLEQYDVKQSSVAELEPRKSQRSAAEMPSSFSEDETAETSSSAD*

>Glyma.18g118400.2.p sequence-type=predicted peptide transcript=Glyma.18g118400.2 locus=Glyma.18g118400 ID=Glyma.18g118400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEEATEFHSEENKLSMEKNKKRRLKTPAQLKGLEDFYNDNKYPTEEMKSELADELELTEKQISGWFCHRRLKDKKMLNDEVCANGRHDRSSGVIQDRGSGLVQDSCGSTKHVDYRYLDPKEVESHGLYNHGFSAADMMYGHNNHHYTENDSATDNTSSESSSSLQDRLLRQGKDLYDMEPSSHLTPNGSLPPLNIKGANNLGYKPSGYLKVKGDIEHAAITAVKKQLGKHYREDGPLLTVEFDTIPPEAFECQIADLANEAYYAANPALPNSPEVSAVKKQSSLSSRYDSYFTKISSQDSHMDRGDFGSLHDSDFQDKKSFQVINQRQNFQSFTNPLPHKNSSLDLNADSTGEASAYNNIKNRRKGTKHGFDGVRYDSASNPSDHYEENNNLAVKQTDSLLHGYENSNLKNVQRSEYVKSKPSNSVHKSQIYLDTEERRGLNKRMAKEEKFDGDRKVKKQYRDPDEVRALTNEMMVAKRAKVDPLEQYDVKQSSVAELEPRKSQR*






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