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Report for Sequence Feature Glyma.18g117500

Feature Type:gene_model
Chromosome:Gm18
Start:14470426
stop:14473401
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g117500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G80930.1AT MIF4G domain-containing protein / MA3 domain-containing protein JGI N/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding JGI N/AIEA
GO:0005488GO-mf binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
PTHR18034Panther CELL CYCLE CONTROL PROTEIN CWF22-RELATED JGI N/AIEA
PTHR18034:SF3Panther PRE-MRNA-SPLICING FACTOR CWC22 HOMOLOG JGI N/AIEA
PF02854PFAM MIF4G domain JGI N/AIEA

Expression Patterns of Glyma.18g117500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18g117500 not represented in the dataset
Glyma.18g117500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g117500
ParalogEvidenceComments
Glyma.08g302400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g117500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments


Coding sequences of Glyma.18g117500
>Glyma.18g117500.1 sequence-type=CDS polypeptide=Glyma.18g117500.1.p locus=Glyma.18g117500 ID=Glyma.18g117500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGAGAAGACACAGCAGCAGCAGCAGCGAGTCAAGTGAGGATGACGTGAGAAAACGCCGTGGTAGTGAATCTGAGGATGGGGAGAGGGATAGGTATCGACACGGTGGTGGGAGTAGTAAGAAGAGTTCCGGTCACTTCAGTCACAGGGCGAACGGTGATGACAGTGATTCGGGAGAAGAAAGAAATGGTGCTAAGAGGGATGGGAAGAGTAAGAGTAGGGAGAGAAAGGAGGAGCCTGAGAGCTCTGAGGAGGAGGGTCAGATTGTGAGCAAAGAGAGGGTTAGGGAGGAGAAGGAGGAAGATGGGAGATTGCAGTGGTGCCATGATGGGCGTGGAAGGAGAGACGACGAAGGAGATGACCGGGGTGGTAGGGAATCTCGTCGTGGGAACGATCAGGATGAAAGGCTAGGGGAGAGAGAGAGTCACAGATTGCATCCTGGTGATAGATGGCGTGGAGGTGATGAGGCCAGGCGGAAATTTAATGATCGCCGTGGGCGTCATGATTCGGAGGAAGAGGATCACAGGGAGCTGGCCAGGAAATCGGAAAGGGATAGATATAGGGATAGGGATAGGAGGCGGAAAGTTGAAAAGGGTGGTGACAATGAGAGGGATTGCCACATGCGTCATTATTCGGAGGAAGAAGATGATAGGGAGTTGGCTAGGAAATCAGATAGGGATAGGAGGCGTAGAGTTGAAAAGGATGGTGGCAGTGAGAGGAACCATAGGGAGAAGGATGTTAGCAAACGGCAAGAAGAAAGTAGGAGGAAAGAGGATGGAAATGGAAGAATGGTTGAAGATGCAAAGCCTCAACAACAGGCAACAATATTGGGAGCTAACCTGAATGGTGATGCATCGAATTTGGGCAAGAGTGGAGGTGTTTACATTCCCCCCTTTAAGATGGCAATGATGATGAAAGAAGTTCAGGATAAAAGTAGTGTAGAATATCAAAGGTTAACGTGGGATGCTTTGAGAAAGAGCATTAATGGGCTTGTAAATAAGGTTAATGCTACTAATATAAAAAATATAATTCCAGAATTGTTTGCGGAAAACCTGATTAGGGGAAGGGGACTCTTTTGTCGTTCATGTATGAAGTCACAGATGGCATCTCCAGGATTTACAGATGTTTTTGCTGCTTTGGTTGCTGTCGTTAATACTAAGTTTCCTGAAGTGGGGGATCTTTTGCTAAGAAGGATTGTTTTGCAGCTTAAGAGAGCTTATAAGCGGAATGACAAGCCTCAATTACTAGCAGCTGTTAAATTTATAGCGCATCTGGTGAATCAGCAAGTGGCTCATGAGATCATTGCTCTAGAGTTACTCACAGTTTTACTCGAGAAACCTACTGATGACAGTGTTGAAGTAGCTGTTGGTTTTGTCACAGAATGTGGTTCAATACTGCAGGATCTCTCACCTAAAGGTCTTCATGGTATTTTTGAGCGTTTTCGTGGATTCTTCATGAAGGAGAAATTGACAAACGTGTTCAGTTTCTGA
Predicted protein sequences of Glyma.18g117500
>Glyma.18g117500.1.p sequence-type=predicted peptide transcript=Glyma.18g117500.1 locus=Glyma.18g117500 ID=Glyma.18g117500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MARRHSSSSSESSEDDVRKRRGSESEDGERDRYRHGGGSSKKSSGHFSHRANGDDSDSGEERNGAKRDGKSKSRERKEEPESSEEEGQIVSKERVREEKEEDGRLQWCHDGRGRRDDEGDDRGGRESRRGNDQDERLGERESHRLHPGDRWRGGDEARRKFNDRRGRHDSEEEDHRELARKSERDRYRDRDRRRKVEKGGDNERDCHMRHYSEEEDDRELARKSDRDRRRRVEKDGGSERNHREKDVSKRQEESRRKEDGNGRMVEDAKPQQQATILGANLNGDASNLGKSGGVYIPPFKMAMMMKEVQDKSSVEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAENLIRGRGLFCRSCMKSQMASPGFTDVFAALVAVVNTKFPEVGDLLLRRIVLQLKRAYKRNDKPQLLAAVKFIAHLVNQQVAHEIIALELLTVLLEKPTDDSVEVAVGFVTECGSILQDLSPKGLHGIFERFRGFFMKEKLTNVFSF*






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