SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.18g117100

Feature Type:gene_model
Chromosome:Gm18
Start:14387749
stop:14391456
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g117100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G11260.1AT Basic-leucine zipper (bZIP) transcription factor family protein JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0000977GO-mf RNA polymerase II regulatory region sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0003700GO-mf DNA binding transcription factor activity EnsemblGenomesN/AIEA
GO:0003700GO-mf sequence-specific DNA binding transcription factor activity JGI N/AIEA
GO:0043565GO-mf sequence-specific DNA binding JGI N/AIEA
PTHR13301Panther X-BOX TRANSCRIPTION FACTOR-RELATED JGI N/AIEA
PTHR13301:SF21Panther JGI N/AIEA
PF00170PFAM bZIP transcription factor JGI N/AIEA

Proteins Associated with Glyma.18g117100
LocusGene SymbolProtein Name
BZIP36 bZIP transcription factor bZIP36
bZIP142 Basic leucine zipper transcription factor-like protein gene 142

Expression Patterns of Glyma.18g117100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g117100
ParalogEvidenceComments
Glyma.08g302500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g117100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g14750 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g117100
>Glyma.18g117100.2 sequence-type=transcript locus=Glyma.18g117100 ID=Glyma.18g117100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
aaagagaAGTGTGTAGTTGGTGAAGTTTTTGAGAAGAATATGGAACGAAGTGGCGGAATGGTAACGGGGTCGCATGAAAGGAACGAACTTGTTAGAGTTAGACACGGTTCTGACAGTGGGTCTAAACCCTTGAAGAATTTAAATGGTCAGATTTGTCAAATATGTGGTGACACCATTGGATTAACGGCTACTGGTGACCTCTTTGTTGCTTGTCATGAGTGTGGCTTCCCACTTTGTCATTCTTGTTACGAGTATGAGCTGAAAAATGTGAGCCAATCTTGTCCCCAGTGCAAGACTACATTCACAAGTCGCCAAGTGGAGGGAgatgatgatgacgaagacgatgctgatgatCTAGATAATGGGATCAACTATGGCCAAGGAAACAATTCCAAGTCGGGGATGCTGTGGGAAGAAGATGCTGACCTCTCTTCATCTTCTGGACATGATTCTCATATACCAAACCCCCATCTAGTAAACGGGCAACCGATGTCTGGTGAGTTTCCATGTGCTACTTCTGATGCTCAATCTATGCAAACTACATCAGATCCTATGGGTCAATCCGAAAAGGTTCACTCACTTCCATATGCTGATCCAAAGCAACCAGGTCCTGAGAGTGATGAAGAGATAAGAAGAGTGCCGGAGATTGGAGGTGAAAGCGCTGGAACTTCAGCCTCTCGGCCAGATGCCGGTTCAAATGCTGGTACAGAACGTGCTCAGGGGACAGGGGACAGCCAGAAGAAGAGAGGGAGAAGCCCAGCTGATAAAGAAAGCAAGCGGCTAAAGAGGCTACTGAGGAATAGAGTTTCGGCTCAGCAAGCAAGGGAGAGGAAGAAGGCATATTTGATTGATTTGGAAACAAGAGTCAAAGACTTAGAGAAGAAGAACTCAGAGCTCAAAGAAAGACTTTCCACTTTGCAGAATGAAAACCAAATGCTTAGACAAATATTGAAGAACACAACAGCAAGCAGGAGAGGGAGCAATAGTGGTACCAATAATGCTGAGTAAACTTATAGATGGAGTAGATATAGAGAGAGAGAAAGAGAAAAAAATTAAACATTAGTTGATGATTCTTTCTAGGTGTGCGTTTGGAATACAATGAAGTAAAGGATGAACCTTAAGACATGCTTTGTCCTAAAATAGTGTGATCTGATGTACCATTGTTGATGAGTAATGTAATTATCATACACAGTTTTTTACAGTCTCATTTTAATTAATAATTATCAAACTACTTGATTACTTATGGTTAACACCATTTGGTGAGGAGATAAGGTGTG

>Glyma.18g117100.3 sequence-type=transcript locus=Glyma.18g117100 ID=Glyma.18g117100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
aaagagaAGTGTGTAGTTGGTGAAGTTTTTGAGAAGAATATGGAACGAAGTGGCGGAATGGTAACGGGGTCGCATGAAAGGAACGAACTTGTTAGAGTTAGACACGGTTCTGACAGTGGGATTTGTCAAATATGTGGTGACACCATTGGATTAACGGCTACTGGTGACCTCTTTGTTGCTTGTCATGAGTGTGGCTTCCCACTTTGTCATTCTTGTTACGAGTATGAGCTGAAAAATGTGAGCCAATCTTGTCCCCAGTGCAAGACTACATTCACAAGTCGCCAAGAGGGTGCTGAAGTGGAGGGAgatgatgatgacgaagacgatgctgatgatCTAGATAATGGGATCAACTATGGCCAAGGAAACAATTCCAAGTCGGGGATGCTGTGGGAAGAAGATGCTGACCTCTCTTCATCTTCTGGACATGATTCTCATATACCAAACCCCCATCTAGTAAACGGGCAACCGATGTCTGGTGAGTTTCCATGTGCTACTTCTGATGCTCAATCTATGCAAACTACATCAGATCCTATGGGTCAATCCGAAAAGGTTCACTCACTTCCATATGCTGATCCAAAGCAACCAGGTCCTGAGAGTGATGAAGAGATAAGAAGAGTGCCGGAGATTGGAGGTGAAAGCGCTGGAACTTCAGCCTCTCGGCCAGATGCCGGTTCAAATGCTGGTACAGAACGTGCTCAGGGGACAGGGGACAGCCAGAAGAAGAGAGGGAGAAGCCCAGCTGATAAAGAAAGCAAGCGGCTAAAGAGGCTACTGAGGAATAGAGTTTCGGCTCAGCAAGCAAGGGAGAGGAAGAAGGCATATTTGATTGATTTGGAAACAAGAGTCAAAGACTTAGAGAAGAAGAACTCAGAGCTCAAAGAAAGACTTTCCACTTTGCAGAATGAAAACCAAATGCTTAGACAAATATTGAAGAACACAACAGCAAGCAGGAGAGGGAGCAATAGTGGTACCAATAATGCTGAGTAAACTTATAGATGGAGTAGATATAGAGAGAGAGAAAGAGAAAAAAATTAAACATTAGTTGATGATTCTTTCTAGGTGTGCGTTTGGAATACAATGAAGTAAAGGATGAACCTTAAGACATGCTTTGTCCTAAAATAGTGTGATCTGATGTACCATTGTTGATGAGTAATGTAATTATCATACACAGTTTTTTACAGTCTCATTTTAATTAATAATTATCAAACTACTTGATTACTTATGGTTA
Coding sequences of Glyma.18g117100
>Glyma.18g117100.1 sequence-type=CDS polypeptide=Glyma.18g117100.1.p locus=Glyma.18g117100 ID=Glyma.18g117100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAACGAAGTGGCGGAATGGTAACGGGGTCGCATGAAAGGAACGAACTTGTTAGAGTTAGACACGGTTCTGACAGTGGGTCTAAACCCTTGAAGAATTTAAATGGTCAGATTTGTCAAATATGTGGTGACACCATTGGATTAACGGCTACTGGTGACCTCTTTGTTGCTTGTCATGAGTGTGGCTTCCCACTTTGTCATTCTTGTTACGAGTATGAGCTGAAAAATGTGAGCCAATCTTGTCCCCAGTGCAAGACTACATTCACAAGTCGCCAAGAGGGTGCTGAAGTGGAGGGAGATGATGATGACGAAGACGATGCTGATGATCTAGATAATGGGATCAACTATGGCCAAGGAAACAATTCCAAGTCGGGGATGCTGTGGGAAGAAGATGCTGACCTCTCTTCATCTTCTGGACATGATTCTCATATACCAAACCCCCATCTAGTAAACGGGCAACCGATGTCTGGTGAGTTTCCATGTGCTACTTCTGATGCTCAATCTATGCAAACTACATCAGATCCTATGGGTCAATCCGAAAAGGTTCACTCACTTCCATATGCTGATCCAAAGCAACCAGGTCCTGAGAGTGATGAAGAGATAAGAAGAGTGCCGGAGATTGGAGGTGAAAGCGCTGGAACTTCAGCCTCTCGGCCAGATGCCGGTTCAAATGCTGGTACAGAACGTGCTCAGGGGACAGGGGACAGCCAGAAGAAGAGAGGGAGAAGCCCAGCTGATAAAGAAAGCAAGCGGCTAAAGAGGCTACTGAGGAATAGAGTTTCGGCTCAGCAAGCAAGGGAGAGGAAGAAGGCATATTTGATTGATTTGGAAACAAGAGTCAAAGACTTAGAGAAGAAGAACTCAGAGCTCAAAGAAAGACTTTCCACTTTGCAGAATGAAAACCAAATGCTTAGACAAATATTGAAGAACACAACAGCAAGCAGGAGAGGGAGCAATAGTGGTACCAATAATGCTGAGTAA

>Glyma.18g117100.2 sequence-type=CDS polypeptide=Glyma.18g117100.2.p locus=Glyma.18g117100 ID=Glyma.18g117100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAACGAAGTGGCGGAATGGTAACGGGGTCGCATGAAAGGAACGAACTTGTTAGAGTTAGACACGGTTCTGACAGTGGGTCTAAACCCTTGAAGAATTTAAATGGTCAGATTTGTCAAATATGTGGTGACACCATTGGATTAACGGCTACTGGTGACCTCTTTGTTGCTTGTCATGAGTGTGGCTTCCCACTTTGTCATTCTTGTTACGAGTATGAGCTGAAAAATGTGAGCCAATCTTGTCCCCAGTGCAAGACTACATTCACAAGTCGCCAAGTGGAGGGAGATGATGATGACGAAGACGATGCTGATGATCTAGATAATGGGATCAACTATGGCCAAGGAAACAATTCCAAGTCGGGGATGCTGTGGGAAGAAGATGCTGACCTCTCTTCATCTTCTGGACATGATTCTCATATACCAAACCCCCATCTAGTAAACGGGCAACCGATGTCTGGTGAGTTTCCATGTGCTACTTCTGATGCTCAATCTATGCAAACTACATCAGATCCTATGGGTCAATCCGAAAAGGTTCACTCACTTCCATATGCTGATCCAAAGCAACCAGGTCCTGAGAGTGATGAAGAGATAAGAAGAGTGCCGGAGATTGGAGGTGAAAGCGCTGGAACTTCAGCCTCTCGGCCAGATGCCGGTTCAAATGCTGGTACAGAACGTGCTCAGGGGACAGGGGACAGCCAGAAGAAGAGAGGGAGAAGCCCAGCTGATAAAGAAAGCAAGCGGCTAAAGAGGCTACTGAGGAATAGAGTTTCGGCTCAGCAAGCAAGGGAGAGGAAGAAGGCATATTTGATTGATTTGGAAACAAGAGTCAAAGACTTAGAGAAGAAGAACTCAGAGCTCAAAGAAAGACTTTCCACTTTGCAGAATGAAAACCAAATGCTTAGACAAATATTGAAGAACACAACAGCAAGCAGGAGAGGGAGCAATAGTGGTACCAATAATGCTGAGTAA

>Glyma.18g117100.3 sequence-type=CDS polypeptide=Glyma.18g117100.3.p locus=Glyma.18g117100 ID=Glyma.18g117100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAACGAAGTGGCGGAATGGTAACGGGGTCGCATGAAAGGAACGAACTTGTTAGAGTTAGACACGGTTCTGACAGTGGGATTTGTCAAATATGTGGTGACACCATTGGATTAACGGCTACTGGTGACCTCTTTGTTGCTTGTCATGAGTGTGGCTTCCCACTTTGTCATTCTTGTTACGAGTATGAGCTGAAAAATGTGAGCCAATCTTGTCCCCAGTGCAAGACTACATTCACAAGTCGCCAAGAGGGTGCTGAAGTGGAGGGAGATGATGATGACGAAGACGATGCTGATGATCTAGATAATGGGATCAACTATGGCCAAGGAAACAATTCCAAGTCGGGGATGCTGTGGGAAGAAGATGCTGACCTCTCTTCATCTTCTGGACATGATTCTCATATACCAAACCCCCATCTAGTAAACGGGCAACCGATGTCTGGTGAGTTTCCATGTGCTACTTCTGATGCTCAATCTATGCAAACTACATCAGATCCTATGGGTCAATCCGAAAAGGTTCACTCACTTCCATATGCTGATCCAAAGCAACCAGGTCCTGAGAGTGATGAAGAGATAAGAAGAGTGCCGGAGATTGGAGGTGAAAGCGCTGGAACTTCAGCCTCTCGGCCAGATGCCGGTTCAAATGCTGGTACAGAACGTGCTCAGGGGACAGGGGACAGCCAGAAGAAGAGAGGGAGAAGCCCAGCTGATAAAGAAAGCAAGCGGCTAAAGAGGCTACTGAGGAATAGAGTTTCGGCTCAGCAAGCAAGGGAGAGGAAGAAGGCATATTTGATTGATTTGGAAACAAGAGTCAAAGACTTAGAGAAGAAGAACTCAGAGCTCAAAGAAAGACTTTCCACTTTGCAGAATGAAAACCAAATGCTTAGACAAATATTGAAGAACACAACAGCAAGCAGGAGAGGGAGCAATAGTGGTACCAATAATGCTGAGTAA
Predicted protein sequences of Glyma.18g117100
>Glyma.18g117100.1.p sequence-type=predicted peptide transcript=Glyma.18g117100.1 locus=Glyma.18g117100 ID=Glyma.18g117100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MERSGGMVTGSHERNELVRVRHGSDSGSKPLKNLNGQICQICGDTIGLTATGDLFVACHECGFPLCHSCYEYELKNVSQSCPQCKTTFTSRQEGAEVEGDDDDEDDADDLDNGINYGQGNNSKSGMLWEEDADLSSSSGHDSHIPNPHLVNGQPMSGEFPCATSDAQSMQTTSDPMGQSEKVHSLPYADPKQPGPESDEEIRRVPEIGGESAGTSASRPDAGSNAGTERAQGTGDSQKKRGRSPADKESKRLKRLLRNRVSAQQARERKKAYLIDLETRVKDLEKKNSELKERLSTLQNENQMLRQILKNTTASRRGSNSGTNNAE*

>Glyma.18g117100.2.p sequence-type=predicted peptide transcript=Glyma.18g117100.2 locus=Glyma.18g117100 ID=Glyma.18g117100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MERSGGMVTGSHERNELVRVRHGSDSGSKPLKNLNGQICQICGDTIGLTATGDLFVACHECGFPLCHSCYEYELKNVSQSCPQCKTTFTSRQVEGDDDDEDDADDLDNGINYGQGNNSKSGMLWEEDADLSSSSGHDSHIPNPHLVNGQPMSGEFPCATSDAQSMQTTSDPMGQSEKVHSLPYADPKQPGPESDEEIRRVPEIGGESAGTSASRPDAGSNAGTERAQGTGDSQKKRGRSPADKESKRLKRLLRNRVSAQQARERKKAYLIDLETRVKDLEKKNSELKERLSTLQNENQMLRQILKNTTASRRGSNSGTNNAE*

>Glyma.18g117100.3.p sequence-type=predicted peptide transcript=Glyma.18g117100.3 locus=Glyma.18g117100 ID=Glyma.18g117100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MERSGGMVTGSHERNELVRVRHGSDSGICQICGDTIGLTATGDLFVACHECGFPLCHSCYEYELKNVSQSCPQCKTTFTSRQEGAEVEGDDDDEDDADDLDNGINYGQGNNSKSGMLWEEDADLSSSSGHDSHIPNPHLVNGQPMSGEFPCATSDAQSMQTTSDPMGQSEKVHSLPYADPKQPGPESDEEIRRVPEIGGESAGTSASRPDAGSNAGTERAQGTGDSQKKRGRSPADKESKRLKRLLRNRVSAQQARERKKAYLIDLETRVKDLEKKNSELKERLSTLQNENQMLRQILKNTTASRRGSNSGTNNAE*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo