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Report for Sequence Feature Glyma.18g116900

Feature Type:gene_model
Chromosome:Gm18
Start:14361159
stop:14366764
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g116900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G13360.1AT alanine:glyoxylate aminotransferase JGI N/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0019265GO-bp glycine biosynthetic process, by transamination of glyoxylate EnsemblGenomesN/AIEA
GO:0005777GO-cc peroxisome EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0004760GO-mf serine-pyruvate transaminase activity EnsemblGenomesN/AIEA
GO:0008453GO-mf alanine-glyoxylate transaminase activity EnsemblGenomesN/AIEA
GO:0008483GO-mf transaminase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
KOG2862 KOG Alanine-glyoxylate aminotransferase AGT1 JGI N/AIEA
PTHR21152Panther AMINOTRANSFERASE CLASS V JGI N/AIEA
PTHR21152:SF7Panther SERINE--PYRUVATE AMINOTRANSFERASE JGI N/AIEA
PF00266PFAM Aminotransferase class-V JGI N/AIEA
GLYSYN-ALA-PWYSoyCyc9 glycine biosynthesis III Plant Metabolic Network ISS
GLYSYN2-PWYSoyCyc9 glycine biosynthesis Plant Metabolic Network ISS
PWY-181SoyCyc9 photorespiration Plant Metabolic Network ISS
GN7V-56967SoyCyc9-rxn serine-glyoxylate transaminase Plant Metabolic Network ISS

Expression Patterns of Glyma.18g116900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g116900
ParalogEvidenceComments
Glyma.08g302600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g116900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g14740 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g116900
>Glyma.18g116900.1 sequence-type=CDS polypeptide=Glyma.18g116900.1.p locus=Glyma.18g116900 ID=Glyma.18g116900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTATTTCAATGCACCAGGAAGAAACCATCTCTTTGTTCCGGGGCCGGTTAACATCCCGGACCAGATCATTCGGGCCATGAACAGAAACAATGAGGACTACCGTTCTCCAGCAATTCCAGCTATGACCAAAACACTGCTTGAGGATGTCAAGAAGATTTTCAAGACCATAACTGGAATCCCATTTCTCATCCCTACAACTGGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATCGAATTGTATCTTTCCTGATTGGCCAATTCAGCTTGCTTTGGATTGATCAGCAGCAACGCCTGAAATTCAATGTTGATGTTGTAGAGAGTGAATGGGGCCAGGGTGCTAAGCTTGATGTTCTGGAATCAAAGATTGCTTCAGATACTTCACACACTATTAAGGCAATTTGCATTGTCCACAATGAGACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTCGATTCCTACCGGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCTATTTGTGCTCTTGATTTCCGCATGGATGAATGGGGAGTTGATGTGGCAATAACTGGCTCTCAGAAGGCCCTTTCCCTTCCCACTGGGATAGGTATTGTGGTTGCAGGACCTAGAGCTATTGAGGCCTCAAAACATGCTAAATCACTTCGAGTTTTCTTTGACTGGAAAGACTACCTGAAATTCTACCAGCTAGGAACGTATTGGCCATACACTCCTTCCATACATTTGCTGTATGGTCTGAGAGCTGCTCTTGATCTGATTTTTGAGGAAGGACTTGAAAATGTGATTGCAAGACACAGTCGTTTAGGCAAAGCAACCAGACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTGGTACAGTGACACTGTGACTGCTGTTCTTGTTCCTGCTTACATTGATAGTACTGAAATAGTTAGAAGGGCATGGAAGAGATACAATTTGAGCTTAGGTCTTGGACTGAACAAAGTTGCTGGGAAGGTTTTCAGAATTGGACATCTTGGCAACTTGAATGAGTTGCAACTGTTGGGATGTCTAGCTGGTGTGGAGATGATACTGAAAGATGTGGGCTATCCTGTAAAGCTTGGAAGTGGAGTTGCTGCTGCCAGTGCATACTTACAGGACACTATTCCTATGATCCCTTCCAGGATTTGA
Predicted protein sequences of Glyma.18g116900
>Glyma.18g116900.1.p sequence-type=predicted peptide transcript=Glyma.18g116900.1 locus=Glyma.18g116900 ID=Glyma.18g116900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDYFNAPGRNHLFVPGPVNIPDQIIRAMNRNNEDYRSPAIPAMTKTLLEDVKKIFKTITGIPFLIPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLKFNVDVVESEWGQGAKLDVLESKIASDTSHTIKAICIVHNETATGVTNDLAKVRQILDSYRHPALLIVDGVSSICALDFRMDEWGVDVAITGSQKALSLPTGIGIVVAGPRAIEASKHAKSLRVFFDWKDYLKFYQLGTYWPYTPSIHLLYGLRAALDLIFEEGLENVIARHSRLGKATRLAVEAWGLKNCTQKEEWYSDTVTAVLVPAYIDSTEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQDTIPMIPSRI*






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