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Report for Sequence Feature Glyma.18g116100

Feature Type:gene_model
Chromosome:Gm18
Start:14187457
stop:14188291
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g116100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G23535.1AT KOW domain-containing protein JGI N/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0005840GO-cc ribosome EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome EnsemblGenomesN/AIEA
PTHR12903Panther MITOCHONDRIAL RIBOSOMAL PROTEIN L24 JGI N/AIEA
PF00467PFAM KOW motif JGI N/AIEA

Expression Patterns of Glyma.18g116100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.18g116100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g14560 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g116100
>Glyma.18g116100.1 sequence-type=CDS polypeptide=Glyma.18g116100.1.p locus=Glyma.18g116100 ID=Glyma.18g116100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTTGGAAAGCAGCTGAGAAACTCATTAGGCACTGGAAAATTCTCAGAGGGGATAATGTTATGATAACAAGGGACATAGATAAGGGTGAAACTGGGATTATAAAGCGTGTCATTCGCTCTCAAAATTATGTCATTGTAAAAAAGCATATCAAGCAAGGGAAAGGTCATGAAGGGGGCATCTTTACAGTGGAAGCCCCACTGCATGCCTCCAATGTGCAAGTTCTTGACCCAGTGATAGGGTATCCTTGCAAGGTTGGAGTTAAATATCTTGAAGATGGTACTAAAGTTAGAGTGTCTAGAGGAATAGGAGAATTAGGGTCCATAGTCCCTCGTCCCAAGATCCTAAAGATAAGAACTATCTCAAGACCTACAATCTGTAAGTATCTAACAAGCTTATGTTTTTTTCTTGTATGA
Predicted protein sequences of Glyma.18g116100
>Glyma.18g116100.1.p sequence-type=predicted peptide transcript=Glyma.18g116100.1 locus=Glyma.18g116100 ID=Glyma.18g116100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGWKAAEKLIRHWKILRGDNVMITRDIDKGETGIIKRVIRSQNYVIVKKHIKQGKGHEGGIFTVEAPLHASNVQVLDPVIGYPCKVGVKYLEDGTKVRVSRGIGELGSIVPRPKILKIRTISRPTICKYLTSLCFFLV*






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