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Report for Sequence Feature Glyma.18g115300

Feature Type:gene_model
Chromosome:Gm18
Start:14038241
stop:14043220
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g115300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G10260.1AT Reticulon family protein JGI N/AIEA
AT3G10260.3AT Reticulon family protein JGI N/AIEA
GO:0005783GO-cc endoplasmic reticulum EnsemblGenomesN/AIEA
GO:0005789GO-cc endoplasmic reticulum membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
KOG1792 KOG Reticulon JGI N/AIEA
PTHR10994Panther RETICULON JGI N/AIEA
PTHR10994:SF27Panther RETICULON-LIKE PROTEIN B1-RELATED JGI N/AIEA
PF02453PFAM Reticulon JGI N/AIEA

Expression Patterns of Glyma.18g115300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g115300
ParalogEvidenceComments
Glyma.08g304100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g115300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g14460 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g115300
>Glyma.18g115300.2 sequence-type=transcript locus=Glyma.18g115300 ID=Glyma.18g115300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCTTATCGTATCTTCCATGCTTATTATTGTACAATTTCTCTTGAGCAAAAGTCTCGAAGGCTTTCTattaaaatcagaatccaaatccaaatcaaaatcaaaattaaaTACATATAAAATGAGAAACATATGATATGGTGTGGTTGGTAGTTGACTAGTTGCAAGTTAGTGAGTTCAGTTATTAAGCTCTTTTGGCATGCTTCTTGTTGGACATAGGATAAACTTTTAGTGCCACAATAACACCctatctctctctctttctctgtctgcctctccctTTGTTTCAATTTCCCCCTGCTTATTCTGGAACAATGTCTGAGAAAACCACAGCTGATAACCTTATTGAAAATCTTGTGGACACATTTGTTGATAAGAAAAAATCTGTATCATTCTTTGAAGATGATAAGTCAGACTCAGTGAGTTCTCAGATCAATAGACTGTTTGGACGCCAGAAACCCGTGCACCATGTTTTAGGGGGTGGAAAATCTGCGGATGTCTTGTTATGGAGGAACAAGAAGATTTCTGCTAGTGTTTTAACAAGTGCAACAATTGTATGGGTGCTTTTCGAATGGCTTAATTATAATTTTCTTACTATTTTATGCTTTGCTTTGGTTCTTGTCATGCTTGCCCAGTTTCTATGGTCAAATGCTTCCGGCATGTTTAACAGTTCACCGTCTAATGTACCCCGTCTTGTTCTCCCAGAAGAACTCTTTGTGAACATTGCAACTGTGGTTGGTGGTTGTTGGATGTTTGTTTGCTGGTGCTGTGATCGGGACCTGGTTCAATTTTATTTCTGTCATCTATATTGGTTTTGTTGCTGCACATACACTTCCAGTTCTCTATGAGATGTATGAGGATGAAGTTGACAACTTTGTATACAAGGTCCTTGGTCAGATGCAAAATCAATATCGAAATTTGGATACCAGTGTGCTCAGCAAAATCCCCAAGGGAAAAGGGAAGAAACATGAATAGGTTTATCCTTATGGCTTGTGTAAATTAATTTGACATTCAATGCCCATCTGAACACATTATGGCAGTTGAGAATGGTGGAAGAAGGTAACAAGAGGGATCAAAATATTTCTTCCATATGAATGATAGAGTGGAATAAATAAAATTGCATTTATAGTTGTAGTACTTATTGTTCCTTTACCTAAGTTGTGATCTTGAAATGTTGTTATCTCATTACTTGGCCAGGCCAGAGACTACATTGGTGGCTGTTGCAAACTTGTGACGGCACTTCAAAGGCAGGTTGTCATATGTGTATTTGGACTAACCACATTGTTAATTTTGTGGAGGTCGATGAGCACTGCTCATCACTGGATATTGTATTGGGTTAAGTGGGTTTACAAGTAAACCACCGCAATTATTTGTTAACATACACGCCTTGTTTTTTTTTAGGAGAAGTGCATTAGCTAGACACACCTTGAGTGTATTCAAGGCTGCTCTTGAGATTTTATGGGTCCAAGGCGAAAAAGTAATTAGATGTTTTTTATATTTAAGTATTTAAAAAATATAAATATATATTGCA

>Glyma.18g115300.3 sequence-type=transcript locus=Glyma.18g115300 ID=Glyma.18g115300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCTTATCGTATCTTCCATGCTTATTATTGTACAATTTCTCTTGAGCAAAAGTCTCGAAGGCTTTCTattaaaatcagaatccaaatccaaatcaaaatcaaaattaaaTACATATAAAATGAGAAACATATGATATGGTGTGGTTGGTAGTTGACTAGTTGCAAGTTAGTGAGTTCAGTTATTAAGCTCTTTTGGCATGCTTCTTGTTGGACATAGGATAAACTTTTAGTGCCACAATAACACCctatctctctctctttctctgtctgcctctccctTTGTTTCAATTTCCCCCTGCTTATTCTGGAACAATGTCTGAGAAAACCACAGCTGATAACCTTATTGAAAATCTTGTGGACACATTTGTTGATAAGAAAAAATCTGTATCATTCTTTGAAGATGATAAGTCAGACTCAGTGAGTTCTCAGATCAATAGACTGTTTGGACGCCAGAAACCCGTGCACCATGTTTTAGGGGGTGGAAAATCTGCGGATGTCTTGTTATGGAGGAACAAGAAGATTTCTGCTAGTGTTTTAACAAGTGCAACAATTGTATGGGTGCTTTTCGAATGGCTTAATTATAATTTTCTTACTATTTTATGCTTTGCTTTGGTTCTTGTCATGCTTGCCCAGTTTCTATGGTCAAATGCTTCCGGCATGTTTAACAGTTCACCGTCTAATGTACCCCGTCTTGTTCTCCCAGAAGAACTCTTTGTGAACATTGCAACTGTGGTTGGTGGTAAGGTTAACATGGGCTTGAGGTTTCTTCAAGATGCTGCCTGTGGAGGAAACTTGAAGCAGTTTCTTGTTGTTGTTGGATGTTTGTTTGCTGGTGCTGTGATCGGGACCTGGTTCAATTTTATTTCTGTCATCTATATTGGTTTTGTTGCTGCACATACACTTCCAGTTCTCTATGAGATGTATGAGGATGAAGTTGACAACTTTGTATACAAGGTCCTTGGTCAGATGCAAAATCAATATCGAAATTTGGATACCAGTGTGCTCAGCAAAATCCCCAAGGGAAAAGGGAAGAAACATGAATAGGTTTATCCTTATGGCTTGTGTAAATTAATTTGACATTCAATGCCCATCTGAACACATTATGGCAGTTGAGAATGGTGGAAGAAGGCCAGAGACTACATTGGTGGCTGTTGCAAACTTGTGACGGCACTTCAAAGGCAGGTTGTCATATGTGTATTTGGACTAACCACATTGTTAATTTTGTGGAGGTCGATGAGCACTGCTCATCACTGGATATTGTATTGGGTTAAGTGGGTTTACAAGTAAACCACCGCAATTATTTGTTAACATACACGCCTTGTTTTTTTTTAGGAGAAGTGCATTAGCTAGACACACCTTGAGTGTATTCAAGGCTGCTCTTGAGATTTTATGGGTCCAAGGCGAAAAAGTAATTAGATGTTTTTTATATTTAAGTATTTAAAAAATATAAATATATATTGCA
Coding sequences of Glyma.18g115300
>Glyma.18g115300.1 sequence-type=CDS polypeptide=Glyma.18g115300.1.p locus=Glyma.18g115300 ID=Glyma.18g115300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTGAGAAAACCACAGCTGATAACCTTATTGAAAATCTTGTGGACACATTTGTTGATAAGAAAAAATCTGTATCATTCTTTGAAGATGATAAGTCAGACTCAGTGAGTTCTCAGATCAATAGACTGTTTGGACGCCAGAAACCCGTGCACCATGTTTTAGGGGGTGGAAAATCTGCGGATGTCTTGTTATGGAGGAACAAGAAGATTTCTGCTAGTGTTTTAACAAGTGCAACAATTGTATGGGTGCTTTTCGAATGGCTTAATTATAATTTTCTTACTATTTTATGCTTTGCTTTGGTTCTTGTCATGCTTGCCCAGTTTCTATGGTCAAATGCTTCCGGCATGTTTAACAGTTCACCGTCTAATGTACCCCGTCTTGTTCTCCCAGAAGAACTCTTTGTGAACATTGCAACTGTGGTTGGTGGTAAGGTTAACATGGGCTTGAGGTTTCTTCAAGATGCTGCCTGTGGAGGAAACTTGAAGCAGTTTCTTGTTGAGACTGGAGTTGGAACCAAATGGAGGTGTGTGAGAGGGGAAAAAACTGAAGACCACGGGATGGTTGTTGGATGTTTGTTTGCTGGTGCTGTGATCGGGACCTGGTTCAATTTTATTTCTGTCATCTATATTGGTTTTGTTGCTGCACATACACTTCCAGTTCTCTATGAGATGTATGAGGATGAAGTTGACAACTTTGTATACAAGGTCCTTGGTCAGATGCAAAATCAATATCGAAATTTGGATACCAGTGTGCTCAGCAAAATCCCCAAGGGAAAAGGGAAGAAACATGAATAG

>Glyma.18g115300.2 sequence-type=CDS polypeptide=Glyma.18g115300.2.p locus=Glyma.18g115300 ID=Glyma.18g115300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTGAGAAAACCACAGCTGATAACCTTATTGAAAATCTTGTGGACACATTTGTTGATAAGAAAAAATCTGTATCATTCTTTGAAGATGATAAGTCAGACTCAGTGAGTTCTCAGATCAATAGACTGTTTGGACGCCAGAAACCCGTGCACCATGTTTTAGGGGGTGGAAAATCTGCGGATGTCTTGTTATGGAGGAACAAGAAGATTTCTGCTAGTGTTTTAACAAGTGCAACAATTGTATGGGTGCTTTTCGAATGGCTTAATTATAATTTTCTTACTATTTTATGCTTTGCTTTGGTTCTTGTCATGCTTGCCCAGTTTCTATGGTCAAATGCTTCCGGCATGTTTAACAGTTCACCGTCTAATGTACCCCGTCTTGTTCTCCCAGAAGAACTCTTTGTGAACATTGCAACTGTGGTTGGTGGTTGTTGGATGTTTGTTTGCTGGTGCTGTGATCGGGACCTGGTTCAATTTTATTTCTGTCATCTATATTGGTTTTGTTGCTGCACATACACTTCCAGTTCTCTATGA

>Glyma.18g115300.3 sequence-type=CDS polypeptide=Glyma.18g115300.3.p locus=Glyma.18g115300 ID=Glyma.18g115300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTGAGAAAACCACAGCTGATAACCTTATTGAAAATCTTGTGGACACATTTGTTGATAAGAAAAAATCTGTATCATTCTTTGAAGATGATAAGTCAGACTCAGTGAGTTCTCAGATCAATAGACTGTTTGGACGCCAGAAACCCGTGCACCATGTTTTAGGGGGTGGAAAATCTGCGGATGTCTTGTTATGGAGGAACAAGAAGATTTCTGCTAGTGTTTTAACAAGTGCAACAATTGTATGGGTGCTTTTCGAATGGCTTAATTATAATTTTCTTACTATTTTATGCTTTGCTTTGGTTCTTGTCATGCTTGCCCAGTTTCTATGGTCAAATGCTTCCGGCATGTTTAACAGTTCACCGTCTAATGTACCCCGTCTTGTTCTCCCAGAAGAACTCTTTGTGAACATTGCAACTGTGGTTGGTGGTAAGGTTAACATGGGCTTGAGGTTTCTTCAAGATGCTGCCTGTGGAGGAAACTTGAAGCAGTTTCTTGTTGTTGTTGGATGTTTGTTTGCTGGTGCTGTGATCGGGACCTGGTTCAATTTTATTTCTGTCATCTATATTGGTTTTGTTGCTGCACATACACTTCCAGTTCTCTATGAGATGTATGAGGATGAAGTTGACAACTTTGTATACAAGGTCCTTGGTCAGATGCAAAATCAATATCGAAATTTGGATACCAGTGTGCTCAGCAAAATCCCCAAGGGAAAAGGGAAGAAACATGAATAG
Predicted protein sequences of Glyma.18g115300
>Glyma.18g115300.1.p sequence-type=predicted peptide transcript=Glyma.18g115300.1 locus=Glyma.18g115300 ID=Glyma.18g115300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSEKTTADNLIENLVDTFVDKKKSVSFFEDDKSDSVSSQINRLFGRQKPVHHVLGGGKSADVLLWRNKKISASVLTSATIVWVLFEWLNYNFLTILCFALVLVMLAQFLWSNASGMFNSSPSNVPRLVLPEELFVNIATVVGGKVNMGLRFLQDAACGGNLKQFLVETGVGTKWRCVRGEKTEDHGMVVGCLFAGAVIGTWFNFISVIYIGFVAAHTLPVLYEMYEDEVDNFVYKVLGQMQNQYRNLDTSVLSKIPKGKGKKHE*

>Glyma.18g115300.2.p sequence-type=predicted peptide transcript=Glyma.18g115300.2 locus=Glyma.18g115300 ID=Glyma.18g115300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSEKTTADNLIENLVDTFVDKKKSVSFFEDDKSDSVSSQINRLFGRQKPVHHVLGGGKSADVLLWRNKKISASVLTSATIVWVLFEWLNYNFLTILCFALVLVMLAQFLWSNASGMFNSSPSNVPRLVLPEELFVNIATVVGGCWMFVCWCCDRDLVQFYFCHLYWFCCCTYTSSSL*

>Glyma.18g115300.3.p sequence-type=predicted peptide transcript=Glyma.18g115300.3 locus=Glyma.18g115300 ID=Glyma.18g115300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSEKTTADNLIENLVDTFVDKKKSVSFFEDDKSDSVSSQINRLFGRQKPVHHVLGGGKSADVLLWRNKKISASVLTSATIVWVLFEWLNYNFLTILCFALVLVMLAQFLWSNASGMFNSSPSNVPRLVLPEELFVNIATVVGGKVNMGLRFLQDAACGGNLKQFLVVVGCLFAGAVIGTWFNFISVIYIGFVAAHTLPVLYEMYEDEVDNFVYKVLGQMQNQYRNLDTSVLSKIPKGKGKKHE*






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