SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.18g115000

Feature Type:gene_model
Chromosome:Gm18
Start:13991860
stop:13999844
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g115000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G15790.1AT peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase JGI N/AIEA
GO:0003755GO-mf peptidyl-prolyl cis-trans isomerase activity EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
PTHR11071Panther PEPTIDYL-PROLYL CIS-TRANS ISOMERASE JGI N/AIEA
PTHR11071:SF98Panther JGI N/AIEA
PF07719PFAM Tetratricopeptide repeat JGI N/AIEA

Expression Patterns of Glyma.18g115000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18g115000 not represented in the dataset
Glyma.18g115000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.18g115000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g14426 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g115000
>Glyma.18g115000.1 sequence-type=CDS polypeptide=Glyma.18g115000.1.p locus=Glyma.18g115000 ID=Glyma.18g115000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTATATTATGCCTTTGCAGAGATAAGTTCAAGTTTGAGAAAAACGAAGTCCCAGAGTTTTACAAACAACTCTGCTTCTAAATTGAAATTAAGGGATGTTAAAGGAGCATTACTGGATACAGAATTTGCAATGTGTGAGGGAGATGACAATGCTAAAGCTTTGTTCCACCAAGGACAGGCATACATGGCACTCCATGACATTCATGTTGCAGTTGAAAGCTTTAAGAAGGCACTGACCATGGAGCCAAATGATGCTGGAATAAAAAAGGAACTTGCTGCAGCTAGGAAGATGATAGCTGATAGGCGTGATCAAGAGAAAAAAGCATATCAAGAGAAAAAAGCATATAGCAAGATGTTCCAATAA
Predicted protein sequences of Glyma.18g115000
>Glyma.18g115000.1.p sequence-type=predicted peptide transcript=Glyma.18g115000.1 locus=Glyma.18g115000 ID=Glyma.18g115000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVYYAFAEISSSLRKTKSQSFTNNSASKLKLRDVKGALLDTEFAMCEGDDNAKALFHQGQAYMALHDIHVAVESFKKALTMEPNDAGIKKELAAARKMIADRRDQEKKAYQEKKAYSKMFQ*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo