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Report for Sequence Feature Glyma.18g114700

Feature Type:gene_model
Chromosome:Gm18
Start:13905956
stop:13911192
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g114700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G36900.1AT membrin 11 JGI N/AIEA
GO:0006623GO-bp protein targeting to vacuole EnsemblGenomesN/AIEA
GO:0006810GO-bp transport EnsemblGenomesN/AIEA
GO:0006888GO-bp ER to Golgi vesicle-mediated transport EnsemblGenomesN/AIEA
GO:0006891GO-bp intra-Golgi vesicle-mediated transport EnsemblGenomesN/AIEA
GO:0006896GO-bp Golgi to vacuole transport EnsemblGenomesN/AIEA
GO:0015031GO-bp protein transport EnsemblGenomesN/AIEA
GO:0016192GO-bp vesicle-mediated transport EnsemblGenomesN/AIEA
GO:0042147GO-bp retrograde transport, endosome to Golgi EnsemblGenomesN/AIEA
GO:0048280GO-bp vesicle fusion with Golgi apparatus EnsemblGenomesN/AIEA
GO:0005789GO-cc endoplasmic reticulum membrane EnsemblGenomesN/AIEA
GO:0005794GO-cc Golgi apparatus EnsemblGenomesN/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0012507GO-cc ER to Golgi transport vesicle membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0031201GO-cc SNARE complex EnsemblGenomesN/AIEA
GO:0031902GO-cc late endosome membrane EnsemblGenomesN/AIEA
GO:0000149GO-mf SNARE binding EnsemblGenomesN/AIEA
GO:0005484GO-mf SNAP receptor activity EnsemblGenomesN/AIEA
KOG3251 KOG Golgi SNAP receptor complex member JGI N/AIEA
PTHR21230Panther VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED JGI N/AIEA
PTHR21230:SF1Panther GOLGI SNAP RECEPTOR COMPLEX MEMBER 2 JGI N/AIEA
PF12352PFAM Snare region anchored in the vesicle membrane C-terminus JGI N/AIEA

Expression Patterns of Glyma.18g114700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g114700
ParalogEvidenceComments
Glyma.08g304700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g114700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g14390 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g114700
>Glyma.18g114700.2 sequence-type=transcript locus=Glyma.18g114700 ID=Glyma.18g114700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AACGGTTCATTTTGCTTTATTCCGGTGACCTTGAAACGTTTTCTCTCTCTCGGAGAAATTCTCAGAAGCCACCGTTACCATCACCGTCGCCGCCATGGAAGGAGGTGGAGGAACGCTCTCGGAGATTCACCAATCCGCGAAGAAGCTCCTGCTTAGGTCTCGCGACGGCCTCGAACGCCTCGAGTATTCTGCCCCCGCCGCTGCCGCCGTCTCCGGCGCCGACTCCGAGCTGTCGTTCGCCGTGAAAAAGGACATCACACAGATCCAATCCCTCTGCGTCGAGATGGACCGACTCTGGCGATCTATCGCCGCAAAACCTCAGCGCGATCTATGGAAAAGAAAAGTGGAACAAATAGCTGAAGAGGCTGAATCTCTGAGAGCAAGTTTGGATAAATATAACTTACGGAATCAGAAACGAATGAGAGAAGCTAATGAGAGAGCAGAACTCTTGGGACGAGCTAATGGGGATTCTGCTCATGTTTTGAGAATTTATGACGAGGAGGCACAAGCATTACAGTCAGTTCGCTCTTCTTCCCAGGAACTGGAAAATGCAAATGCACTTGGGGAGGCCATCCTTTCTTCAATACATGGCCAAAGAGAACGCTTGAAGAGTGCACATCGAAAAGCATTGGACATCCTCAATACAGTGGGGATATCAAACTCTGTTTTGAGGCTAATTGAGAGACGAAACCGAGTCGACCAATGGATCAAATATGCAGGGATGCTATTGACTGTCATTTTCCTGTTAGCGTTTATTATGTGGAGACATTGATCATTCTCAGATGTGGAGACATTGAAATTTCTGTTTATGAGAGAGCATATGAAAGTGAAATACAAAGTATATTTTGGCTGAAATGCGAAACCTAAACAGCTTGTGCATCATGAGGTGATAGAGAGACAGACACCAAAGAGAAGCGGACAAACAGATAATGGTGAAC
Coding sequences of Glyma.18g114700
>Glyma.18g114700.1 sequence-type=CDS polypeptide=Glyma.18g114700.1.p locus=Glyma.18g114700 ID=Glyma.18g114700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGGAGGTGGAGGAACGCTCTCGGAGATTCACCAATCCGCGAAGAAGCTCCTGCTTAGGTCTCGCGACGGCCTCGAACGCCTCGAGTATTCTGCCCCCGCCGCTGCCGCCGTCTCCGGCGCCGACTCCGAGCTGTCGTTCGCCGTGAAAAAGGACATCACACAGATCCAATCCCTCTGCGTCGAGATGGACCGACTCTGGCGATCTATCGCCGCAAAACCTCAGCGCGATCTATGGAAAAGAAAAGTGGAACAAATAGCTGAAGAGGCTGAATCTCTGAGAGCAAGTTTGGATAAATATAACTTACGGAATCAGAAACGAATGAGAGAAGCTAATGAGAGAGCAGAACTCTTGGGACGAGCTAATGGGGATTCTGCTCATGTTTTGAGAATTTATGACGAGGAGGCACAAGCATTACAGTCAGTTCGCTCTTCTTCCCAGGAACTGGAAAATGCAAATGCACTTGGGGAGGCCATCCTTTCTTCAATACATGGCCAAAGAGAACGCTTGAAGAGTGCACATCGAAAAGCATTGGACATCCTCAATACAGTGGGGATATCAAACTCTGTTTTGAGGCTAATTGAGAGACGAAACCGAGTCGACCAATGGATCAAATATGCAGGGATGCTATTGACTGTCATTTTCCTGTTAGCGTTTATTATGTGGAGACATTGA

>Glyma.18g114700.2 sequence-type=CDS polypeptide=Glyma.18g114700.2.p locus=Glyma.18g114700 ID=Glyma.18g114700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGGAGGTGGAGGAACGCTCTCGGAGATTCACCAATCCGCGAAGAAGCTCCTGCTTAGGTCTCGCGACGGCCTCGAACGCCTCGAGTATTCTGCCCCCGCCGCTGCCGCCGTCTCCGGCGCCGACTCCGAGCTGTCGTTCGCCGTGAAAAAGGACATCACACAGATCCAATCCCTCTGCGTCGAGATGGACCGACTCTGGCGATCTATCGCCGCAAAACCTCAGCGCGATCTATGGAAAAGAAAAGTGGAACAAATAGCTGAAGAGGCTGAATCTCTGAGAGCAAGTTTGGATAAATATAACTTACGGAATCAGAAACGAATGAGAGAAGCTAATGAGAGAGCAGAACTCTTGGGACGAGCTAATGGGGATTCTGCTCATGTTTTGAGAATTTATGACGAGGAGGCACAAGCATTACAGTCAGTTCGCTCTTCTTCCCAGGAACTGGAAAATGCAAATGCACTTGGGGAGGCCATCCTTTCTTCAATACATGGCCAAAGAGAACGCTTGAAGAGTGCACATCGAAAAGCATTGGACATCCTCAATACAGTGGGGATATCAAACTCTGTTTTGAGGCTAATTGAGAGACGAAACCGAGTCGACCAATGGATCAAATATGCAGGGATGCTATTGACTGTCATTTTCCTGTTAGCGTTTATTATGTGGAGACATTGA
Predicted protein sequences of Glyma.18g114700
>Glyma.18g114700.1.p sequence-type=predicted peptide transcript=Glyma.18g114700.1 locus=Glyma.18g114700 ID=Glyma.18g114700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEGGGGTLSEIHQSAKKLLLRSRDGLERLEYSAPAAAAVSGADSELSFAVKKDITQIQSLCVEMDRLWRSIAAKPQRDLWKRKVEQIAEEAESLRASLDKYNLRNQKRMREANERAELLGRANGDSAHVLRIYDEEAQALQSVRSSSQELENANALGEAILSSIHGQRERLKSAHRKALDILNTVGISNSVLRLIERRNRVDQWIKYAGMLLTVIFLLAFIMWRH*

>Glyma.18g114700.2.p sequence-type=predicted peptide transcript=Glyma.18g114700.2 locus=Glyma.18g114700 ID=Glyma.18g114700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEGGGGTLSEIHQSAKKLLLRSRDGLERLEYSAPAAAAVSGADSELSFAVKKDITQIQSLCVEMDRLWRSIAAKPQRDLWKRKVEQIAEEAESLRASLDKYNLRNQKRMREANERAELLGRANGDSAHVLRIYDEEAQALQSVRSSSQELENANALGEAILSSIHGQRERLKSAHRKALDILNTVGISNSVLRLIERRNRVDQWIKYAGMLLTVIFLLAFIMWRH*






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