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Report for Sequence Feature Glyma.18g112100

Feature Type:gene_model
Chromosome:Gm18
Start:13320598
stop:13322839
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g112100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G07900.1AT Mitochondrial transcription termination factor family protein JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0008380GO-bp RNA splicing EnsemblGenomesN/AIEA
GO:0009658GO-bp chloroplast organization EnsemblGenomesN/AIEA
GO:0032502GO-bp developmental process EnsemblGenomesN/AIEA
GO:0042255GO-bp ribosome assembly EnsemblGenomesN/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0003690GO-mf double-stranded DNA binding EnsemblGenomesN/AIEA
GO:0003727GO-mf single-stranded RNA binding EnsemblGenomesN/AIEA
GO:0019843GO-mf rRNA binding EnsemblGenomesN/AIEA
KOG1267 KOG Mitochondrial transcription termination factor, mTERF JGI N/AIEA
PTHR13068Panther CGI-12 PROTEIN-RELATED JGI N/AIEA
PTHR13068:SF3Panther MTERF DOMAIN-CONTAINING PROTEIN 1, MITOCHONDRIAL JGI N/AIEA
PF02536PFAM mTERF JGI N/AIEA

Expression Patterns of Glyma.18g112100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g112100
ParalogEvidenceComments
Glyma.08g306100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g112100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g13720 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g112100
>Glyma.18g112100.1 sequence-type=CDS polypeptide=Glyma.18g112100.1.p locus=Glyma.18g112100 ID=Glyma.18g112100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCAAATCTGACAACGTTCACTGAAATCTATGGAAACTACCACAAAGGTGACACTTTTACTGTGTCTTATCTCATCAACTCATGTGGGGTGTCCCCAAGAAAAGCCAAGGAACTCTCCAATAGGATCAATTTGAAAACCCCAGATGGCCCAAATGCTGTTATTGATCTTCTCAACAACTATGGCTTCACCAAAACCCATCTTGCAAAACTTGTGGAGAAACACCCTTTGGTGCTTGTTGCGGATGCAGAGAATACCCTTTTGCCTAAACTCAAGTTCTTCCGTTCTATTGGGCTTTCCAACACTGATATGCGTAAGATTTTAATTGCTAACCATACCTTGAACAGGAGCTTGAAAAAATTCTTCATCCCACGTTATGAGATCCTCAGACGTGTACTTGGTGATGATCAGGAAGTTGTTAGAGCTATAACAAATTCCCGATTTGGTTTTACATATGGTGACACAATGAACTTGGTTCCAAACATTGAGGTTTTGAGGCAGTCTGGTGTGCCGCAAGCTTCTATCACTTTCCTGATGATCAATTCTGCGACTGTAGCCTACTGGAAGCATTCCAGATTTGTGGAAGCTGTCAACACTGCTAAGGAAATTGGGCTTAATCCCTTGAGAACAAATTTTATTGTGGCCGTTGAAATGCTTCTAATTAGGAGCAAAGCCGTATGGGAATCAAGGTTTGAGGTTTATGAGAGGTGGGGTTGGAATCGCGAAATGGCTCTTCAAGTATTTCGAAAGTTTCCCTGTGTTATGAAGTTGTCAGAGGAGACGTTTGCCAAAAAAATGAGTTTCCTAGTTAAAGATATGGGTTGGTTATCAGAAGATATTGCTGAATATCCTCAGGTGATAGCGTACAACTTGGAGAAGAGGATTATCCCTAGATTCTCGGTAATCAAAATCTTGAAATCAAAAGGTCTGATTGAGAACAAATTGCACTTAAGTGCCATTATTTGCATAACTGAGAAAAAATTTCTAGAGAATTTTGTGGTCAGTTTTCAGAAAGATTTGCCTCTCTTACCAGATGTCTATGGTGGAAAGGTCAAGCCTTCAAATGTAATGTAA
Predicted protein sequences of Glyma.18g112100
>Glyma.18g112100.1.p sequence-type=predicted peptide transcript=Glyma.18g112100.1 locus=Glyma.18g112100 ID=Glyma.18g112100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPNLTTFTEIYGNYHKGDTFTVSYLINSCGVSPRKAKELSNRINLKTPDGPNAVIDLLNNYGFTKTHLAKLVEKHPLVLVADAENTLLPKLKFFRSIGLSNTDMRKILIANHTLNRSLKKFFIPRYEILRRVLGDDQEVVRAITNSRFGFTYGDTMNLVPNIEVLRQSGVPQASITFLMINSATVAYWKHSRFVEAVNTAKEIGLNPLRTNFIVAVEMLLIRSKAVWESRFEVYERWGWNREMALQVFRKFPCVMKLSEETFAKKMSFLVKDMGWLSEDIAEYPQVIAYNLEKRIIPRFSVIKILKSKGLIENKLHLSAIICITEKKFLENFVVSFQKDLPLLPDVYGGKVKPSNVM*






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