SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.18g109800

Feature Type:gene_model
Chromosome:Gm18
Start:12684200
stop:12692664
Source:JGI
Version:Wm82.a4.v1
High confidence:yes



Annotations for Glyma.18g109800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G38020.1AT EMB258,MAN,VCL1 JGI N/AIEA
GO:0006886GO-bp intracellular protein transport JGI N/AIEA
GO:0007033GO-bp vacuole organization JGI N/AIEA
GO:0005737GO-cc cytoplasm JGI N/AIEA
PTHR12811PantherFam VACUOLAR PROTEIN SORTING VPS16 JGI N/AIEA
PTHR12811:SF0PantherFam VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 16 HOMOLOG JGI N/AIEA
PF04840Pfam Vps16, C-terminal region JGI N/AIEA
PF04841Pfam Vps16, N-terminal region JGI N/AIEA

Gene model name correspondences to Glyma.18g109800 Gene Call Version Wm82.a4.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g13250 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g109800
>Glyma.18g109800.1 sequence-type=CDS polypeptide=Glyma.18g109800.1.p locus=Glyma.18g109800 id=Glyma.18g109800.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGGCGAACGTGTCCGTCGCGGCGGAGTGGCAGCTCCTCTACAACCGCTACTACCGCAAGCCGGAGCTCTACCCTATGCCGTGGAAGCACGTGGACCTCGCCCGCACCAAGGTCGCCGCCGCGCCCTTCGGCGGCCCCATCGCCGTCATCCGCGACGACTCCAAGATCGTGCAGCTCCACGCTGAGTCCGCCCTCCGTAAGCTCCGCCTCTTCTCCTCCTCGGGCCGCCCCCTCGCCGACGCCGTCTGGCGCCACCCCGGCGGCCGCCTCGTCGGAATGTCCTGGACCGACGACCAGACTCTCCTATGCGTCGTCCAGGACGGCACCGTCTACCGCTATGACGTCCACGCCAACCTAATCGAACCGAACCTCTCCCTCGGGAAAGAGTGCTTTGAAGATAACGTTGCGGATTGCGTGTTTTGGGGGAACGGTTTGGTTTGCATCACCGAGGCGAATCAGTTGTTCTGTATTGCCGATTTCAGGAACCCTAGCGCGGTGAAGCTCGCGGATCCCGAGATCGAGGAAATGCCGCATTGTATGGCCGTGATTGAGCCGCAGTACACGGTATCCGGGAATGTTGAGGTTTTGCTCGGCGTGGATGATGCTGTGGTGCTTGCTGTGGAGGAAGATGGCGTGCAGAGGCTCGGGGAGGGAGTGCTGCGGGGGCCGCTGCAGAAGATGGTGGTTTCGCGCGACGGCAAGTGGCTCGCGTCGTTTACTCACGACGGGAGGCTCTTGGTGACGACTTCGGACTTGACTGGAGTTATCATCGAGAGGGAGTGTGAGTCAGCTCTTCCTCCGCAGCAGATTGCTTGGTGTGGAATGGATGCTGTGCTGCTGTACTGGGATGATATGCTTTTAATGATGAGTCCTGAGGGAGAGCCAGTTCACTACCTTTTTGATGAACCAATAATTCTTATACCTGAGTGTGATGGAGTAAGGATATTGTCCAATACTAGAATGGAATTTCTACAGCGGGTGCCTGATTCCACCGTTTCAATCTTCACAATTGGAAGTACATCACCTGCTGCTTTACTATATGATGCCTTGGATCATTTTGATAGACGAAGTGCCAAGGCAGATGAAAATTTGAGATTGATAAGATCATCCCTTCCTGAGGCTGTTGAAGCATGTGTTGATGCTGCAGGTCATGAATTTGATCTTTCACGCCAGCAAACTCTCCTAAGGGCAGCCAGTTATGGGCAAGCCTTTTGTAGCAATTTTCAACGTGATCGTATCCAAGAGATGTGTAAAATTCTGCGGGTCTTGAATGCAGTGCGCAGCCCTGAGATTGGCGTTCCTCTTAGTATTCAGCAATACAAGTTGCTTACACCATCTGTTCTGATTGGTCGCCTGATTAATGCTCACCAACATCTGCTTGCACTGAAAATATCAGAATATCTTGGAATGAATCAAGAGGTGGTGATAATGCACTGGGCATGTTCAAAGATAACTGCTTCACTGGCAATTCCTGATGCGACTCTTCTGGAGATTCTGCTGGATAAGTTAAAACTGTGCAAAGGCATATCCTATGCAGCAGTTGCTGCTCATGCAGACAAAAATGGCCGACGAAAGTTATCTGCCTTGCTTGTTGAACATGAGCCTCGTTCATCGAAACAGGTTCCTCTCCTGTTAAGCATTGGAGAAGAAGATATAGCCTTGATGAAGGCAACCGAATGTGGTGATACAGATCTTGTTTACCTTGTACTTTTTCATATTTGGCAAAAGAGGCAGCCATTGGAGTTCTTTGGCACCATACAGGCCAGACCATTGGCACGGGACTTATTTATAACTTATGCACGGTTTTATAAACATGAATTTTTGAAGGACTTCTTCTTATCAACTGGGCAACTGCAAGATGTGGCATTTCTTCTGTGGAAAGAATCCTGGGAACTTGGGAAAAACCCCATGGCAAGCAAAGGATCTCCACTTCATGGTCCTCGAATAAAACTTATTGAGAAGGCACATGGTCTTTTTGCTGAAACCAAGGAGCATACCTTTGAATCAAAGGCAGCTGAAGAGCATGCAAAACTTTTAAGAATTCAGCACGAACTTGAAGTGACTACAAAGCAGGCTATTTTTGTGGATTCTAGTATAAGTGATACAATCCGTACTTGTATTGTCTTGGGAAATCATCGAGCAGCAATGAAAGTGAAAACAGAATTTAAGGTGTCTGAGAAGAGATGGTATTGGCTTAAAGTTTTTGCCTTAGCAACAATCAAGGATTGGGTTGCCTTAGAGAAATTTTCAAAGGAGAAGAAACCTCCAATTGGTTATAGACCATTTGTTGAGGCATGCATTGAAGCGGATGAAAAGGGAGAAGCTATTAAATATATCCCAAAACTTGCAGACCCTCGAGAAAGAGCTGAGTCATATGCTCGAATTGGTATGGCCAAGGAAGCTGCCGATGCTGCTTCACAGGCAAAAGATGGTGAATTACTTGGTCGGTTGAAATTGACATTTGCACAAAATGCAGCAGCTTCATCAATATTTGATACTCTTCGAGATCGGTTGTCTTTCCAAGGTGCTTAA
Predicted protein sequences of Glyma.18g109800
>Glyma.18g109800.1.p sequence-type=predicted peptide transcript=Glyma.18g109800.1 locus=Glyma.18g109800 id=Glyma.18g109800.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MANVSVAAEWQLLYNRYYRKPELYPMPWKHVDLARTKVAAAPFGGPIAVIRDDSKIVQLHAESALRKLRLFSSSGRPLADAVWRHPGGRLVGMSWTDDQTLLCVVQDGTVYRYDVHANLIEPNLSLGKECFEDNVADCVFWGNGLVCITEANQLFCIADFRNPSAVKLADPEIEEMPHCMAVIEPQYTVSGNVEVLLGVDDAVVLAVEEDGVQRLGEGVLRGPLQKMVVSRDGKWLASFTHDGRLLVTTSDLTGVIIERECESALPPQQIAWCGMDAVLLYWDDMLLMMSPEGEPVHYLFDEPIILIPECDGVRILSNTRMEFLQRVPDSTVSIFTIGSTSPAALLYDALDHFDRRSAKADENLRLIRSSLPEAVEACVDAAGHEFDLSRQQTLLRAASYGQAFCSNFQRDRIQEMCKILRVLNAVRSPEIGVPLSIQQYKLLTPSVLIGRLINAHQHLLALKISEYLGMNQEVVIMHWACSKITASLAIPDATLLEILLDKLKLCKGISYAAVAAHADKNGRRKLSALLVEHEPRSSKQVPLLLSIGEEDIALMKATECGDTDLVYLVLFHIWQKRQPLEFFGTIQARPLARDLFITYARFYKHEFLKDFFLSTGQLQDVAFLLWKESWELGKNPMASKGSPLHGPRIKLIEKAHGLFAETKEHTFESKAAEEHAKLLRIQHELEVTTKQAIFVDSSISDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATIKDWVALEKFSKEKKPPIGYRPFVEACIEADEKGEAIKYIPKLADPRERAESYARIGMAKEAADAASQAKDGELLGRLKLTFAQNAAASSIFDTLRDRLSFQGA*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo