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Report for Sequence Feature Glyma.18g105500

Feature Type:gene_model
Chromosome:Gm18
Start:11705137
stop:11710003
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g105500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G46160.1AT Ribosomal protein L14p/L23e family protein JGI N/AIEA
AT5G46160.2AT Ribosomal protein L14p/L23e family protein JGI N/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0006412GO-bp translation JGI N/AIEA
GO:0005762GO-cc mitochondrial large ribosomal subunit EnsemblGenomesN/AIEA
GO:0005840GO-cc ribosome EnsemblGenomesN/AIEA
GO:0005840GO-cc ribosome JGI N/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0009536GO-cc plastid EnsemblGenomesN/AIEA
GO:0015934GO-cc large ribosomal subunit EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome JGI N/AIEA
GO:0019843GO-mf rRNA binding EnsemblGenomesN/AIEA
GO:0070180GO-mf large ribosomal subunit rRNA binding EnsemblGenomesN/AIEA
KOG0901 KOG 60S ribosomal protein L14/L17/L23 JGI N/AIEA
PTHR11761Panther 50S/60S RIBOSOMAL PROTEIN L14/L23 JGI N/AIEA
PTHR11761:SF3Panther 54S RIBOSOMAL PROTEIN L38, MITOCHONDRIAL JGI N/AIEA
PF00238PFAM Ribosomal protein L14p/L23e JGI N/AIEA

Expression Patterns of Glyma.18g105500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18g105500 not represented in the dataset
Glyma.18g105500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g105500
ParalogEvidenceComments
Glyma.08g310400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g105500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g12540 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g105500
>Glyma.18g105500.2 sequence-type=transcript locus=Glyma.18g105500 ID=Glyma.18g105500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTAAACCGACCTTATGATCATAAAACATTAGAAACACTTTTCGATTAGTTTTTAATCCTTGCATATTTGAATATATTTGATCCGAGAATAGGCTACCCAATCTATCCGAGTAACTTCTAAATTTAACGGATCAAAATAAAATAAAATTCTTAATCTTTATGACAAAATTATTTTACCTCTCAGAGTACTTTTTCACCTCGAGAGTAAAAATCAAGCGAAAGACGTGGTTTCAAATTGGGGAAAAGGAAGAAAGGGCAAGAGAGTCGAGAAACGGCGCACTCCGTCTGTTCCTCACCGTCACCGGCGCGCGCACCCTCTGTTCCAGCGACTCCTAATTAAGTTGGGAAATAAAAAAGACTTCAAATTTCCCAGATGGCTGCAGCCTTTGCTTCCAGATGCTCTCGTGCAACAACGTACCTTCATACAGATGAGGACTGTTCTCAAGGTTGTCGATAACTCAGGTGCTAAAAAGGTGATGTGCATACAGGCATTGAAAGGGAAGAAAGGGGCAAGATTAGGTGACACAATAATAGCATCTGTGAAGGAAGCACATCCTAATGGAAAAGTGAAGAAAGGGAAGGTTGTATATGGGGTAGTTGTGCGTGCAGCAATGCAAAAGGGACGTTGTGATGGCAGTGAGGTCAAGTTTGATGATAATGCTGTGGTGCTTGTTGACAAGCAAGGACAACCTATTGGAACCAGAGTTTTTGGACCAGTGCCTCATGAGCTAAGGCAAAAGAAGCATGTCAAGATTCTTACCTTGGCAGGGCACATTGCATAAATGAGACAAAAGGGTTGTCCTTAAATTTTGTTATGAATTCCAATGTCACATCTACCATTTTTATATTTGGATATTTTAGTGTGATGTGCAAGTTTTAGTACTTTATCAGTTTATGAGGAGTAAAACAGGTGTAGAAGGCTTCTACTTGAATAACTAGAATTTGATTTGGTTTCTAGCCTAAAAATGAACTAGAGACACGAAAGTGATGTGTGTTTCATATGTAACATATCAACTTATTTATGATTATGATTTTTTTATTTTATTTAC

>Glyma.18g105500.3 sequence-type=transcript locus=Glyma.18g105500 ID=Glyma.18g105500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTAAACCGACCTTATGATCATAAAACATTAGAAACACTTTTCGATTAGTTTTTAATCCTTGCATATTTGAATATATTTGATCCGAGAATAGGCTACCCAATCTATCCGAGTAACTTCTAAATTTAACGGATCAAAATAAAATAAAATTCTTAATCTTTATGACAAAATTATTTTACCTCTCAGAGTACTTTTTCACCTCGAGAGTAAAAATCAAGCGAAAGACGTGGTTTCAAATTGGGGAAAAGGAAGAAAGGGCAAGAGAGTCGAGAAACGGCGCACTCCGTCTGTTCCTCACCGTCACCGGCGCGCGCACCCTCTGTTCCAGCGACTCCTAATTAAGGAAATAAAAAAGACTTCAAATTTCCCAGATGGCTGCAGCCTTTGCTTCCAGATGCTCTCGTGTGGGCCGTTCTCTGTCTGGTGGATTAAGCAACAGTTCCCCTGGTTTATTTACCTCATCACATGGCATGACATGCAACAATTTGTTTTCTCAGCAACAACGTACCTTCATACAGATGAGGACTGTTCTCAAGGTTGTCGATAACTCAGGTGCTAAAAAGGTGATGTGCATACAGGCATTGAAAGGGAAGAAAGGGGCAAGATTAGGTGACACAATAATAGCATCTGTGAAGGAAGCACATCCTAATGGAAAAGTGAAGAAAGGGAAGGTTGTATATGGGGTAGTTGTGCGTGCAGCAATGCAAAAGGGACGTTGTGATGGCAGTGAGGTCAAGTTTGATGATAATGCTGTGGTGCTTGTTGACAAGCAAGGACAACCTATTGGAACCAGAGTTTTTGGACCAGTGCCTCATGAGCTAAGGCAAAAGAAGCATGTCAAGATTCTTACCTTGGCAGGGCACATTGCATAAATGAGACAAAAGGGTTGTCCTTAAATTTTGTTATGAATTCCAATGTCACATCTACCATTTTTATATTTGGATATTTTAGTGTGATGTGCAAGTTTTAGTACTTTATCAGTTTATGAGGAGTAAAACAGGTGTAGAAGGCTTCTACTTGAATAACTAGAATTTGATTTGGTTTCTAGCCTAAAAATGAACTAGAGACACGAAAGTGATGTGTGTTTCATATGTAACATATCAACTTATTTATGATTATGATTTTTTTATTTTATTTAC
Coding sequences of Glyma.18g105500
>Glyma.18g105500.1 sequence-type=CDS polypeptide=Glyma.18g105500.1.p locus=Glyma.18g105500 ID=Glyma.18g105500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCAGCCTTTGCTTCCAGATGCTCTCGTGTGGGCCGTTCTCTGTCTGGTGGATTAAGCAACAGTTCCCCTGGTTTATTTACCTCATCACATGGCATGACATGCAACAATTTGTTTTCTCAGCAACAACGTACCTTCATACAGATGAGGACTGTTCTCAAGGTTGTCGATAACTCAGGTGCTAAAAAGGTGATGTGCATACAGGCATTGAAAGGGAAGAAAGGGGCAAGATTAGGTGACACAATAATAGCATCTGTGAAGGAAGCACATCCTAATGGAAAAGTGAAGAAAGGGAAGGTTGTATATGGGGTAGTTGTGCGTGCAGCAATGCAAAAGGGACGTTGTGATGGCAGTGAGGTCAAGTTTGATGATAATGCTGTGGTGCTTGTTGACAAGCAAGGACAACCTATTGGAACCAGAGTTTTTGGACCAGTGCCTCATGAGCTAAGGCAAAAGAAGCATGTCAAGATTCTTACCTTGGCAGGGCACATTGCATAA

>Glyma.18g105500.2 sequence-type=CDS polypeptide=Glyma.18g105500.2.p locus=Glyma.18g105500 ID=Glyma.18g105500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGGACTGTTCTCAAGGTTGTCGATAACTCAGGTGCTAAAAAGGTGATGTGCATACAGGCATTGAAAGGGAAGAAAGGGGCAAGATTAGGTGACACAATAATAGCATCTGTGAAGGAAGCACATCCTAATGGAAAAGTGAAGAAAGGGAAGGTTGTATATGGGGTAGTTGTGCGTGCAGCAATGCAAAAGGGACGTTGTGATGGCAGTGAGGTCAAGTTTGATGATAATGCTGTGGTGCTTGTTGACAAGCAAGGACAACCTATTGGAACCAGAGTTTTTGGACCAGTGCCTCATGAGCTAAGGCAAAAGAAGCATGTCAAGATTCTTACCTTGGCAGGGCACATTGCATAA

>Glyma.18g105500.3 sequence-type=CDS polypeptide=Glyma.18g105500.3.p locus=Glyma.18g105500 ID=Glyma.18g105500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCAGCCTTTGCTTCCAGATGCTCTCGTGTGGGCCGTTCTCTGTCTGGTGGATTAAGCAACAGTTCCCCTGGTTTATTTACCTCATCACATGGCATGACATGCAACAATTTGTTTTCTCAGCAACAACGTACCTTCATACAGATGAGGACTGTTCTCAAGGTTGTCGATAACTCAGGTGCTAAAAAGGTGATGTGCATACAGGCATTGAAAGGGAAGAAAGGGGCAAGATTAGGTGACACAATAATAGCATCTGTGAAGGAAGCACATCCTAATGGAAAAGTGAAGAAAGGGAAGGTTGTATATGGGGTAGTTGTGCGTGCAGCAATGCAAAAGGGACGTTGTGATGGCAGTGAGGTCAAGTTTGATGATAATGCTGTGGTGCTTGTTGACAAGCAAGGACAACCTATTGGAACCAGAGTTTTTGGACCAGTGCCTCATGAGCTAAGGCAAAAGAAGCATGTCAAGATTCTTACCTTGGCAGGGCACATTGCATAA
Predicted protein sequences of Glyma.18g105500
>Glyma.18g105500.1.p sequence-type=predicted peptide transcript=Glyma.18g105500.1 locus=Glyma.18g105500 ID=Glyma.18g105500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAAFASRCSRVGRSLSGGLSNSSPGLFTSSHGMTCNNLFSQQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIIASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRQKKHVKILTLAGHIA*

>Glyma.18g105500.2.p sequence-type=predicted peptide transcript=Glyma.18g105500.2 locus=Glyma.18g105500 ID=Glyma.18g105500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIIASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRQKKHVKILTLAGHIA*

>Glyma.18g105500.3.p sequence-type=predicted peptide transcript=Glyma.18g105500.3 locus=Glyma.18g105500 ID=Glyma.18g105500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAAFASRCSRVGRSLSGGLSNSSPGLFTSSHGMTCNNLFSQQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIIASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRQKKHVKILTLAGHIA*






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