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Report for Sequence Feature Glyma.18g104400

Feature Type:gene_model
Chromosome:Gm18
Start:11482927
stop:11506669
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g104400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G58750.1AT citrate synthase 2 JGI N/AIEA
GO:0006099GO-bp tricarboxylic acid cycle EnsemblGenomesN/AIEA
GO:0044262GO-bp cellular carbohydrate metabolic process JGI N/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0046912GO-mf transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer EnsemblGenomesN/AIEA
GO:0046912GO-mf transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer JGI N/AIEA
KOG2617 KOG Citrate synthase JGI N/AIEA
PTHR11739Panther CITRATE SYNTHASE JGI N/AIEA
PF00285PFAM Citrate synthase JGI N/AIEA
GLYOXYLATE-BYPASSSoyCyc9 glyoxylate cycle Plant Metabolic Network ISS
PWY-5464SoyCyc9 superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle Plant Metabolic Network ISS
PWY-561SoyCyc9 superpathway of glyoxylate cycle and fatty acid degradation Plant Metabolic Network ISS
PWY-5690SoyCyc9 TCA cycle II (plants and fungi) Plant Metabolic Network ISS
PWY-6549SoyCyc9 L-glutamine biosynthesis III Plant Metabolic Network ISS
GN7V-52388SoyCyc9-rxn citrate (Si)-synthase Plant Metabolic Network ISS

Expression Patterns of Glyma.18g104400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18g104400 not represented in the dataset
Glyma.18g104400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g104400
ParalogEvidenceComments
Glyma.08g311200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g104400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g12393 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g104400
>Glyma.18g104400.1 sequence-type=CDS polypeptide=Glyma.18g104400.1.p locus=Glyma.18g104400 ID=Glyma.18g104400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCAAAAACAACAACTTCTTCTTCCGAACAAACTGCACGCAACCGTTTGGCCACCCTCGCAGCTCACTTGCTTCCCTCCGACGCCGCCTCCGCCACCGCGATCCTCCGCCCCCACCGCCTCTCCGCCCCCGCCGGATCCTCTCCGCCGGTGAACCTGAAGGGTACTGTCACCGTCGTCGACGAGAGGACCGGCAAGAAGTACCAGATCGAAGTCACCCCAGATGGCACTGTCAGAGCCTCTGACTTCAAGAAGATATCAACTGGGAAAAATGACAAGGGACTCAAACTTTATGATCCTGGCTATTTGAACACTGCTCCTGTCATCTCAAGGATTTCTTACATTGATGGTGATGCTGGAATCCTTAGATATAGAGGATATCCTATTGAGGACTTGGCAGAGAAAAGCAGCTTTATGGAAGTGTCATATCTCATAATGTATGGAAATTTGCCTTCTGAAAGTCAGTTAACAGAATGGGAGTTCACCATATCTCAGCATTCAGCTGTACCACAAGGAGTTTTGGATATGATACAATCAATGCCTCATGATGCACATCCTATGGGTATGCTTGTCAATGCCATGAGTGCTTTGTCTGTTTATCATCCTGATGCAAATCCTGCTCTCAAAGGTCTTGATATCTACAACTCAAAGCAAGTGAGAGACAAGCAAGTAGCACGGGTTATTGGAAAGATAACAACAATTGCTGCTGCAATTAATCTTAGATTGGCAGGAAGGCCACCTGTGCTTCCATCCAACAAACTTTCTTACACAGAGAACTTCCTATACATGCTAGATTCTTTTGGCAATCGATCATATAAACCTAATCCTCGGCTAACTCGAGCACTGGACATTATCTTCATCCTGCATGCAGAACATGAAATGAATTGCTCTACATCTGCTGTACGACACCTCTCATCAAGTGGTGTTGATGTATATACTGCTATTGCCGGGGCTGTTGGAGCTCTATATGGACCTCTTCATGGTGGAGCCAATGAGGCTGTCCTCAAAATGCTGAGTGAAATTGGAACTGCTGAGAACATTCCAGCGTTCATTGAAGGTGTTAAATCCAGGAAACGAAAGCTCAGTGGTTTTGGACATCGCGTGTACAAAAATTATGATCCAAGAGCAAAGGTCTTGAGGAAACTGACAGAGGAAGTGTTTACCATTGTTGGCCGGGATCCTCTTATAGAGATTGCGGTTGCCTTGGAGAAGATTGCACTGTCTGATGAGTATTTCATCAAGAGGAAGCTATATCCAAATGTTGACTTCTACTCTGGACTGATTTACAGGGCCATGGGCTTTCAACCTGAGTTTTTCACTGTTTTATTTGCCATCCCTCGAATGGCTGGGTACTTGGCACATTGGCGAGAGTCATTGGATGATCCTGATACAAAGATTATGAGACCTCAACAGGTTTATGTTGGGGAGTGGTTGAGGCATTATGCACCAATCAATCAAAGGACTACATCAAGTAACACTGACAAACTTGGTCAATTGGCTGTATCAAACGCCTCAAAGAGGCGACTTGCTGGATCTGGGGCTTAA
Predicted protein sequences of Glyma.18g104400
>Glyma.18g104400.1.p sequence-type=predicted peptide transcript=Glyma.18g104400.1 locus=Glyma.18g104400 ID=Glyma.18g104400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSKTTTSSSEQTARNRLATLAAHLLPSDAASATAILRPHRLSAPAGSSPPVNLKGTVTVVDERTGKKYQIEVTPDGTVRASDFKKISTGKNDKGLKLYDPGYLNTAPVISRISYIDGDAGILRYRGYPIEDLAEKSSFMEVSYLIMYGNLPSESQLTEWEFTISQHSAVPQGVLDMIQSMPHDAHPMGMLVNAMSALSVYHPDANPALKGLDIYNSKQVRDKQVARVIGKITTIAAAINLRLAGRPPVLPSNKLSYTENFLYMLDSFGNRSYKPNPRLTRALDIIFILHAEHEMNCSTSAVRHLSSSGVDVYTAIAGAVGALYGPLHGGANEAVLKMLSEIGTAENIPAFIEGVKSRKRKLSGFGHRVYKNYDPRAKVLRKLTEEVFTIVGRDPLIEIAVALEKIALSDEYFIKRKLYPNVDFYSGLIYRAMGFQPEFFTVLFAIPRMAGYLAHWRESLDDPDTKIMRPQQVYVGEWLRHYAPINQRTTSSNTDKLGQLAVSNASKRRLAGSGA*






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