SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.18g103800

Feature Type:gene_model
Chromosome:Gm18
Start:11256853
stop:11276927
Source:JGI
Version:Wm82.a4.v1
High confidence:yes



Annotations for Glyma.18g103800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G31300.1AT ARPC1,ARPC1B JGI N/AIEA
GO:0030833GO-bp regulation of actin filament polymerization JGI N/AIEA
GO:0034314GO-bp Arp2/3 complex-mediated actin nucleation JGI N/AIEA
GO:0005885GO-cc Arp2/3 protein complex JGI N/AIEA
GO:0015629GO-cc actin cytoskeleton JGI N/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
K05757KEGG Cytoskeleton proteins JGI N/AIEA
KOG1523 KOG Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC JGI N/AIEA
PTHR10709PantherFam ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 1 JGI N/AIEA
PF00400Pfam WD domain, G-beta repeat JGI N/AIEA

Gene model name correspondences to Glyma.18g103800 Gene Call Version Wm82.a4.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g12250 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g103800
>Glyma.18g103800.1 sequence-type=CDS polypeptide=Glyma.18g103800.1.p locus=Glyma.18g103800 id=Glyma.18g103800.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGGCGGTGATGGCCGTTCACCAATTCGCGCAATGCATCACTTGCCACGCTTGGAGCCCCGATCAATCCATGGTGGCTTTATGTCCAAACAATAATGAAGTGCACATCTATAGGTTGGTTGAAGACAAATGGGAAAAGGTGCATGTTCTTCAAAAGCATGACCAGGTAATTTCTGGGATAGACTGGAGCACAAGATCAAATAGAATAGTTACTGCATCCCATGATCGGAATTCATATGTCTGGAACCTTGAAGGATCAGAATGGGTGCCTACTCTTGTTATCCTTAGACTAAACCGTGCTGCTCTTTGTGTTCAATGGAGTCCAAAAGAAAACAAATTTGCAGTGGGAAGTGGAGCCAAAACTGTTTGTATATGCTACTATGAGCAGGAAAACAACTGGTGGGTCAGCAAACTTATCAGGAAAAGACATGATTCTTCCGTGACAAGTGTTTCTTGGCATCCCGATAATATTCTTCTTGCTACAACATCCACAGATGGGAAATGCCGAGTATTCTCCACCTTGATAAAAGGCGTTGATGCAAAGGATTCAAAAAAGGGTACTTCATCAGATTCAAAATTTGGAGAGCTGATTGTTCAGCTTGATCTCTCATCATCTTGGACATTCGGAGTCAAGTGGTCACCAAGTGGTAATACTCTAGCATATGCAGGTCATAATTCTATGATATATTTTGTTGATGATGTTGGTCCTTCTCCTTTGGCCCAAAACGTTGTGTTCCGTGATTTGCCGCTCCGTGATGTATTATTTGTTTCCGAGAGAAAAGTGATAGGTGTGGGATTTGACTGTAACCCAATGGTTTTTGCCGCAGATGAAAGGGGAATTTGGAGTTTTGTAAGATATTTGGGAGAACGAAAAGCAGCATCTTCTGGACCAAGATATGGCTCACAGTTCTCTGAAGCATTTGGAAAGTTTTATGGCCAATCAAAGCATGGAGTGAGCAATGATGCAGTTGAAACTTCTAGAGCTCGTGGAACTGTTCATGAAAACTGTATAAATTGTATTATGCCTCTTGGGGATCATGGCACGTTGATAAGGCGTTTCAGCACATCAGGATTGGATGGAAGAATTGTTGTATGGGATTTGGAAAATGAGCAAGACCTGTTGGAATTATAA
Predicted protein sequences of Glyma.18g103800
>Glyma.18g103800.1.p sequence-type=predicted peptide transcript=Glyma.18g103800.1 locus=Glyma.18g103800 id=Glyma.18g103800.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MAVMAVHQFAQCITCHAWSPDQSMVALCPNNNEVHIYRLVEDKWEKVHVLQKHDQVISGIDWSTRSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVSWHPDNILLATTSTDGKCRVFSTLIKGVDAKDSKKGTSSDSKFGELIVQLDLSSSWTFGVKWSPSGNTLAYAGHNSMIYFVDDVGPSPLAQNVVFRDLPLRDVLFVSERKVIGVGFDCNPMVFAADERGIWSFVRYLGERKAASSGPRYGSQFSEAFGKFYGQSKHGVSNDAVETSRARGTVHENCINCIMPLGDHGTLIRRFSTSGLDGRIVVWDLENEQDLLEL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo