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Report for Sequence Feature Glyma.18g103800

Feature Type:gene_model
Chromosome:Gm18
Start:11328565
stop:11348597
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g103800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G31300.1AT actin-related protein C1B JGI N/AIEA
GO:0030833GO-bp regulation of actin filament polymerization EnsemblGenomesN/AIEA
GO:0034314GO-bp Arp2/3 complex-mediated actin nucleation EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005856GO-cc cytoskeleton EnsemblGenomesN/AIEA
GO:0005885GO-cc Arp2/3 protein complex EnsemblGenomesN/AIEA
GO:0015629GO-cc actin cytoskeleton EnsemblGenomesN/AIEA
GO:0003779GO-mf actin binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0051015GO-mf actin filament binding EnsemblGenomesN/AIEA
KOG1523 KOG Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC JGI N/AIEA
PTHR10709Panther ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 1 JGI N/AIEA
PF00400PFAM WD domain, G-beta repeat JGI N/AIEA

Expression Patterns of Glyma.18g103800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g103800
ParalogEvidenceComments
Glyma.08g311700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g103800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g12250 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g103800
>Glyma.18g103800.1 sequence-type=CDS polypeptide=Glyma.18g103800.1.p locus=Glyma.18g103800 ID=Glyma.18g103800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGTGATGGCCGTTCACCAATTCGCGCAATGCATCACTTGCCACGCTTGGAGCCCCGATCAATCCATGGTGGCTTTATGTCCAAACAATAATGAAGTGCACATCTATAGGTTGGTTGAAGACAAATGGGAAAAGGTGCATGTTCTTCAAAAGCATGACCAGGTAATTTCTGGGATAGACTGGAGCACAAGATCAAATAGAATAGTTACTGCATCCCATGATCGGAATTCATATGTCTGGAACCTTGAAGGATCAGAATGGGTGCCTACTCTTGTTATCCTTAGACTAAACCGTGCTGCTCTTTGTGTTCAATGGAGTCCAAAAGAAAACAAATTTGCAGTGGGAAGTGGAGCCAAAACTGTTTGTATATGCTACTATGAGCAGGAAAACAACTGGTGGGTCAGCAAACTTATCAGGAAAAGACATGATTCTTCCGTGACAAGTGTTTCTTGGCATCCCGATAATATTCTTCTTGCTACAACATCCACAGATGGGAAATGCCGAGTATTCTCCACCTTGATAAAAGGCGTTGATGCAAAGGATTCAAAAAAGGGTACTTCATCAGATTCAAAATTTGGAGAGCTGATTGTTCAGCTTGATCTCTCATCATCTTGGACATTCGGAGTCAAGTGGTCACCAAGTGGTAATACTCTAGCATATGCAGGTCATAATTCTATGATATATTTTGTTGATGATGTTGGTCCTTCTCCTTTGGCCCAAAACGTTGTGTTCCGTGATTTGCCGCTCCGTGATGTATTATTTGTTTCCGAGAGAAAAGTGATAGGTGTGGGATTTGACTGTAACCCAATGGTTTTTGCCGCAGATGAAAGGGGAATTTGGAGTTTTGTAAGATATTTGGGAGAACGAAAAGCAGCATCTTCTGGACCAAGATATGGCTCACAGTTCTCTGAAGCATTTGGAAAGTTTTATGGCCAATCAAAGCATGGAGTGAGCAATGATGCAGTTGAAACTTCTAGAGCTCGTGGAACTGTTCATGAAAACTGTATAAATTGTATTATGCCTCTTGGGGATCATGGCACGTTGATAAGGCGTTTCAGCACATCAGGATTGGATGGAAGAATTGTTGTATGGGATTTGGAAAATGAGCAAGACCTGTTGGAATTATAA
Predicted protein sequences of Glyma.18g103800
>Glyma.18g103800.1.p sequence-type=predicted peptide transcript=Glyma.18g103800.1 locus=Glyma.18g103800 ID=Glyma.18g103800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAVMAVHQFAQCITCHAWSPDQSMVALCPNNNEVHIYRLVEDKWEKVHVLQKHDQVISGIDWSTRSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVSWHPDNILLATTSTDGKCRVFSTLIKGVDAKDSKKGTSSDSKFGELIVQLDLSSSWTFGVKWSPSGNTLAYAGHNSMIYFVDDVGPSPLAQNVVFRDLPLRDVLFVSERKVIGVGFDCNPMVFAADERGIWSFVRYLGERKAASSGPRYGSQFSEAFGKFYGQSKHGVSNDAVETSRARGTVHENCINCIMPLGDHGTLIRRFSTSGLDGRIVVWDLENEQDLLEL*






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