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Report for Sequence Feature Glyma.18g102400

Feature Type:gene_model
Chromosome:Gm18
Start:10855420
stop:10859231
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g102400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G54840.1AT Ras-related small GTP-binding family protein JGI N/AIEA
GO:0007049GO-bp cell cycle EnsemblGenomesN/AIEA
GO:0007264GO-bp small GTPase mediated signal transduction JGI N/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0003924GO-mf GTPase activity EnsemblGenomesN/AIEA
GO:0005525GO-mf GTP binding EnsemblGenomesN/AIEA
GO:0005525GO-mf GTP binding JGI N/AIEA
KOG1673 KOG Ras GTPases JGI N/AIEA
PTHR24073Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24073:SF279Panther JGI N/AIEA
PF08477PFAM Miro-like protein JGI N/AIEA

Expression Patterns of Glyma.18g102400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.18g102400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g12020 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g102400
>Glyma.18g102400.1 sequence-type=CDS polypeptide=Glyma.18g102400.1.p locus=Glyma.18g102400 ID=Glyma.18g102400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCAAAATCATTGGCAAGAGCAGAAGAAGAAGAACAACGACGACTCAACAACTATGCCACAGAATGGTTCACCATGTCAACGTCCACTGCAACCTGTTCCATAGGGTGTCCTTTCTTGGCCGGTTCATTTGGGACAGGATGCTTCTCTGCTCTCTTGGAAGGCCTTCTTACCTCAGGCTGCCCCTCCGTGACCCGCCACCGCAGGCCACCGTCCACGGTGGCGCCTCCATGCATGGATACCCCTTCACCACCACCACCCCCTCCCCCTGTGACTCTGACTCTGATTTGGTCAACCTCAAGATCAGCTTGCTTGGTGATTGCCATATTGGAAAAACTAGTTTTGTGATCAAGTATGTAGGGGATGAGCAAGAAAAAAGGAGCTTGCAGATGAAGGGACTTAATTTGATGGACAAAACTTTATTTGTTCAAGGAGCTAGGATTTCGTTTAGTATATGGGATGTTGCAGGTGACACAGGGTCCCTTTATCAAATTCCAATGGCTTGTAAAGATTCAGTTGCAATTTTGATTATGTTTGATCTCACCAGTCGGTGTACACTGAATAGTGTTGTTGGATGGTACAGTAAAGCAAGAAAGTGGAATCAGATTGCAATTCCCATTCTAATAGGAACCAAATTTGATGATTTTGTTAAACTCCCCCCAGATGTGCAATGGACAATTGTAACACAGGCAAGGGCATATGCAAGGGCAATGAATGCTACTCTTTTCTTCTCAAGTGCAACCCACAATATAAATGTCAACAAAATCTTCAAGTTTATCATGGCCAAGCTCTTCAACTTGCCATGGAAAGTGGAACGAAATCTGACACTAGGAGAACCCACAATTGACTTCTGA
Predicted protein sequences of Glyma.18g102400
>Glyma.18g102400.1.p sequence-type=predicted peptide transcript=Glyma.18g102400.1 locus=Glyma.18g102400 ID=Glyma.18g102400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAKIIGKSRRRRTTTTQQLCHRMVHHVNVHCNLFHRVSFLGRFIWDRMLLCSLGRPSYLRLPLRDPPPQATVHGGASMHGYPFTTTTPSPCDSDSDLVNLKISLLGDCHIGKTSFVIKYVGDEQEKRSLQMKGLNLMDKTLFVQGARISFSIWDVAGDTGSLYQIPMACKDSVAILIMFDLTSRCTLNSVVGWYSKARKWNQIAIPILIGTKFDDFVKLPPDVQWTIVTQARAYARAMNATLFFSSATHNINVNKIFKFIMAKLFNLPWKVERNLTLGEPTIDF*






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