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Report for Sequence Feature Glyma.18g099500

Feature Type:gene_model
Chromosome:Gm18
Start:10451349
stop:10452922
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g099500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G27030.1AT fatty acid desaturase A JGI N/AIEA
GO:0000209GO-bp protein polyubiquitination EnsemblGenomesN/AIEA
GO:0030433GO-bp ubiquitin-dependent ERAD pathway EnsemblGenomesN/AIEA
GO:0005783GO-cc endoplasmic reticulum EnsemblGenomesN/AIEA
GO:0031625GO-mf ubiquitin protein ligase binding EnsemblGenomesN/AIEA
GO:0061630GO-mf ubiquitin protein ligase activity EnsemblGenomesN/AIEA
KOG3011 KOG Ubiquitin-conjugating enzyme JGI N/AIEA
PTHR24067Panther UBIQUITIN-CONJUGATING ENZYME E2 JGI N/AIEA
PTHR24067:SF57Panther UBIQUITIN-CONJUGATING ENZYME E2 S JGI N/AIEA
PF10520PFAM Kua-ubiquitin conjugating enzyme hybrid localisation domain JGI N/AIEA
PWY-762SoyCyc9 phospholipid desaturation Plant Metabolic Network ISS
GN7V-65283SoyCyc9-rxn Enzyme name not determined Plant Metabolic Network ISS

Expression Patterns of Glyma.18g099500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g099500
ParalogEvidenceComments
Glyma.08g314700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g099500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g11620 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g099500
>Glyma.18g099500.1 sequence-type=CDS polypeptide=Glyma.18g099500.1.p locus=Glyma.18g099500 ID=Glyma.18g099500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTATTCCTTAGCCCAACACAAGTACATACCACGCTTCCACCTCCAAGCTTGCAAGAACCACCCACCCCACCACCCATCGTCTCCAGTGTTTTGTTCCACCACAACCACAACGTCTAGGGACAAGCCCAATCCTAAGCCATTGGTCATTGAGCCATGGCTCGTGCCGGTGCCGCCAACGGTGGTTACCGCCGATAACCCCCGTCCAATGAACAATGACCCAAGTTTGCAATCAACATGGTCTCATAGAGCATGGGTGGCAGCTGGATGCACAACTTTGCTCATTTCATTGGGAGAGTCTATAAAGGGTGCAATGGATTTGAACATGTGGGCTGAGCCCATTTTGGCAGGTTGGGTTGGATATATTTTGGCTGATCTTGGATCTGGGGTTTACCATTGGGCCATTGACAATTATGGCGATGCTTCAATCCCAATTGTTGGAACCCAAATTGAAGCCTTTCAAGGTCATCACAAGTGGCCTTGGACCATCACTAAGCGTCAATTTGCTAACAATTTGCATGCATTGGCACGTGCAGTGACCTTTACAGTGCTTCCTATAGTCCTTCTTTGCCATGACCCTATTGTTGAAGGGTTTGTTGGGATGTGTTCAGGTTGCATCATGTTTAGTCAACAGTTTCATGCATGGTCACACGGCACAAAGAGCCGGCTTCCCCCGCTCGTGGTGGCGTTGCAAGAGGCTGGTGTGCTTGTGTCACGGTCGCAACATGCCGCACACCACCGGCCACCGTATAACAACAACTACTGCATAGTGAGTGGAGTATGGAATGAGTTTCTTGATAAGCATAAGGTCTTTGAAGCCTTGGAGATGGTATTGTATTTTAAAACAGGGGTTAGGCCAAGGTCATGGAGTGAGACTGCCTCTGAGTGGATTGAGGAGATTGAGACCCCTTCTCAAATCCAAGCTCAATGA
Predicted protein sequences of Glyma.18g099500
>Glyma.18g099500.1.p sequence-type=predicted peptide transcript=Glyma.18g099500.1 locus=Glyma.18g099500 ID=Glyma.18g099500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYSLAQHKYIPRFHLQACKNHPPHHPSSPVFCSTTTTTSRDKPNPKPLVIEPWLVPVPPTVVTADNPRPMNNDPSLQSTWSHRAWVAAGCTTLLISLGESIKGAMDLNMWAEPILAGWVGYILADLGSGVYHWAIDNYGDASIPIVGTQIEAFQGHHKWPWTITKRQFANNLHALARAVTFTVLPIVLLCHDPIVEGFVGMCSGCIMFSQQFHAWSHGTKSRLPPLVVALQEAGVLVSRSQHAAHHRPPYNNNYCIVSGVWNEFLDKHKVFEALEMVLYFKTGVRPRSWSETASEWIEEIETPSQIQAQ*






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