SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.18g096400

Feature Type:gene_model
Chromosome:Gm18
Start:9875937
stop:9881522
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g096400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G54940.1AT Translation initiation factor SUI1 family protein JGI N/AIEA
GO:0006413GO-bp translational initiation EnsemblGenomesN/AIEA
GO:0006413GO-bp translational initiation JGI N/AIEA
GO:0003743GO-mf translation initiation factor activity EnsemblGenomesN/AIEA
GO:0003743GO-mf translation initiation factor activity JGI N/AIEA
KOG1770 KOG Translation initiation factor 1 (eIF-1/SUI1) JGI N/AIEA
PTHR10388Panther EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 JGI N/AIEA
PF01253PFAM Translation initiation factor SUI1 JGI N/AIEA

Expression Patterns of Glyma.18g096400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g096400
ParalogEvidenceComments
Glyma.08g316700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g096400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g11010 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g096400
>Glyma.18g096400.2 sequence-type=transcript locus=Glyma.18g096400 ID=Glyma.18g096400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAACATATCATTCTTTGTTTGCTTCTCAAGTCTCTCGAAGCCTCTTTCTCTCTCTTCTAGCACCTTCCTATTGATTCCTGATTCCGGGAGTTTGATGATTGGCCTTCATTAGAAGCTATCTGTGTTTGGTGTTACTAAGTCTCCAACAAGCAAAGTACATGGTTGATTTGGAAATCCAGGTCCCCACCCCATTCGACCCGTTTGCCGAGGCGAGAGAATCGGATGCCCCCGGAGCAAAGGAGTATGTGCATATTCGAATTCAGCAGAGGAATGGGAAGAAGAGTCTGACCACAGTGCAAGGGCTGAAGAAGGAGTTCAGCTACGAGAAGATCCTCAAGGACCTCAAGAAGGAGTTCTGCTGCAACGGAACCGTGGTGCAGGACAAGGAGCTTGGCAAGATCATCCAACTCCAAGGCGACCAGCGTAAGAACGTCTCCCACTTCCTCGTTCAGGCTGGCCTTGTCAGGAAGGACCAGATCAAGATTCATGGTTTTTGACCAATTGGTCTTGTTTTTGTTAGTAGTAATTTCAAGTTGTTCTTGAGTTTGTGAGTTTTGAAAGTTTGGATTGTTTTTCTGTTTGATGAGTGGTGTTGCAATAAgtttggtttggtttggtttggtttggtttTCCAATTTTTAATGATTGGATTTCATGGATGTTGTTAGTGAACTTGAATTGTTCCAAAGCAAGTTACAGTTAATAAATGATAATTCGGTTTTCAGAAGATGGTGGATTCTACAGTGTCTACAATGTTTTTTACTTTAGCTGATTTTGCTGCATAAGTTTCAAATTCAATTTCTCAATGGTTGGCATTGTGAGAGGCTAGAGTAGATAACCAATCAACCATCAAAACGGTAACTACAATAGAAAACAACTCACCGATCTTTTTTATGTTGTATCTGGGGTGAGTCCTGAAGTtttgatttttctgtttgatgaatggtgtttggaattcggtttggtttggtgttCCAATTTTTAATGATTGGGTTTCATAGATGTTGAATACTGTATTAGATATTCTTGTATATATTTTTATTTTTGTATGCACATTCTTTTTATAT
Coding sequences of Glyma.18g096400
>Glyma.18g096400.1 sequence-type=CDS polypeptide=Glyma.18g096400.1.p locus=Glyma.18g096400 ID=Glyma.18g096400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTGATTTGGAAATCCAGGTCCCCACCCCATTCGACCCGTTTGCCGAGGCGAGAGAATCGGATGCCCCCGGAGCAAAGGAGTATGTGCATATTCGAATTCAGCAGAGGAATGGGAAGAAGAGTCTGACCACAGTGCAAGGGCTGAAGAAGGAGTTCAGCTACGAGAAGATCCTCAAGGACCTCAAGAAGGAGTTCTGCTGCAACGGAACCGTGGTGCAGGACAAGGAGCTTGGCAAGATCATCCAACTCCAAGGCGACCAGCATGTCATGCATGGCGCTACCATCACTAGCGCCTTCGAAGGGACGTGGCACATGGTGCTGGTGTCGCCATTCCCATCAGCGCCTCCCCTTTTGTTGACGTGGCTTTGGAAGCGCCAACAACAATGGCGAGTTGAGCATGGGCAGTTAAACGCAAAGCCCTAG

>Glyma.18g096400.2 sequence-type=CDS polypeptide=Glyma.18g096400.2.p locus=Glyma.18g096400 ID=Glyma.18g096400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTGATTTGGAAATCCAGGTCCCCACCCCATTCGACCCGTTTGCCGAGGCGAGAGAATCGGATGCCCCCGGAGCAAAGGAGTATGTGCATATTCGAATTCAGCAGAGGAATGGGAAGAAGAGTCTGACCACAGTGCAAGGGCTGAAGAAGGAGTTCAGCTACGAGAAGATCCTCAAGGACCTCAAGAAGGAGTTCTGCTGCAACGGAACCGTGGTGCAGGACAAGGAGCTTGGCAAGATCATCCAACTCCAAGGCGACCAGCGTAAGAACGTCTCCCACTTCCTCGTTCAGGCTGGCCTTGTCAGGAAGGACCAGATCAAGATTCATGGTTTTTGA
Predicted protein sequences of Glyma.18g096400
>Glyma.18g096400.1.p sequence-type=predicted peptide transcript=Glyma.18g096400.1 locus=Glyma.18g096400 ID=Glyma.18g096400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVDLEIQVPTPFDPFAEARESDAPGAKEYVHIRIQQRNGKKSLTTVQGLKKEFSYEKILKDLKKEFCCNGTVVQDKELGKIIQLQGDQHVMHGATITSAFEGTWHMVLVSPFPSAPPLLLTWLWKRQQQWRVEHGQLNAKP*

>Glyma.18g096400.2.p sequence-type=predicted peptide transcript=Glyma.18g096400.2 locus=Glyma.18g096400 ID=Glyma.18g096400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVDLEIQVPTPFDPFAEARESDAPGAKEYVHIRIQQRNGKKSLTTVQGLKKEFSYEKILKDLKKEFCCNGTVVQDKELGKIIQLQGDQRKNVSHFLVQAGLVRKDQIKIHGF*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo